Browse Element(s) Details


Os.46730.1.S1_at

Description gb:AK120072.1
DB_XREF= gi:37989695
TID=Os.46730.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0087H07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006F14, full insert sequence.
FL= gb:AK120072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0473011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed
LOC_Os10g04730Os.46730.1.S1_at11/1110+2241638..2246767Protein kinase domain containing protein, expressed
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04750OsAffx.20760.1.S1_at10/1110+2262698..2263592F-box domain containing protein
LOC_Os10g04760OsAffx.20759.1.S1_at9/1110+2265117..2266872transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46730.1.S1_at--824--1471Chr10:2246101..2246125 (25 bp)
AGAATTCTGGTTCCCATCATAGTGG
LOC_Os10g04730
Os.46730.1.S1_at--243--471Chr10:2246137..2246265 (25 bp)
ATCTCCTTGGATTTGCATGGTCACT
LOC_Os10g04730
Os.46730.1.S1_at--793--151Chr10:2246305..2246329 (25 bp)
ATTAGTTTCCAAATATCCTCCTGCA
LOC_Os10g04730
Os.46730.1.S1_at--244--9091Chr10:2246421..2246445 (25 bp)
TGCTAAGCAGCAAGACGATGGTCCT
LOC_Os10g04730
Os.46730.1.S1_at--1004--6231Chr10:2246437..2246461 (25 bp)
GATGGTCCTGGCTGAACCTAAGCAC
LOC_Os10g04730
Os.46730.1.S1_at--387--3731Chr10:2246454..2246478 (25 bp)
CTAAGCACCCGGGATATTTCAATGT
LOC_Os10g04730
Os.46730.1.S1_at--761--5951Chr10:2246495..2246519 (25 bp)
GAGCAATCTGTTCTTACTGAGCCAT
LOC_Os10g04730
Os.46730.1.S1_at--341--5851Chr10:2246536..2246560 (25 bp)
GACCATATCTGCCATAAGTGCTAGA
LOC_Os10g04730
Os.46730.1.S1_at--931--6491Chr10:2246559..2246583 (25 bp)
GATAGTTTATTCTTCATGTGTCATG
LOC_Os10g04730
Os.46730.1.S1_at--42--7131Chr10:2246578..2246602 (25 bp)
GTCATGTGGCTTTCGTTGATCCAAT
LOC_Os10g04730
Os.46730.1.S1_at--54--7011Chr10:2246668..2246692 (25 bp)
GTACTCCCCAAAGAGTGATCCTAGA
LOC_Os10g04730
Target Sequence 
AGAATTCTGGTTCCCATCATAGTGGAGACTTTATCAATCTCCTTGGATTTGCATGGTCACTATGGGGAGAGGGAAGATGG
CTTGAACTCATCGATGAATCATTAGTTTCCAAATATCCTCCTGCAGAAAATGAAATCATGAGGTGCATTAACATAGCATT
GCTGTGTGTACAAGAGAATGCAGCTGATCGACCAACCATGTCAGATGTTGTTGCAATGCTAAGCAGCAAGACGATGGTCC
TGGCTGAACCTAAGCACCCGGGATATTTCAATGTGAGAGTGGCAAATGAAGAGCAATCTGTTCTTACTGAGCCATGTAGT
GTTAATGATATGACCATATCTGCCATAAGTGCTAGATAGTTTATTCTTCATGTGTCATGTGGCTTTCGTTGATCCAATGT
ACGTAGTATTTGAAGATATCATAACAGAATTATAATGCTGTGGTATTTCAGGTGTCGGAGTATGTACTCCCCAAAGAGTG
ATCCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis