Browse Element(s) Details


Os.46733.1.S1_at

Description gb:NM_194733.1
DB_XREF= gi:37530825
TID=Os.46733.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46733 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBb0004A06.5), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0419011/11disease resistance protein RPM1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein
LOC_Os10g04180Os.18720.1.S1_at10/1110+1933447..1936961NB-ARC domain containing protein, expressed
LOC_Os10g04190Os.46733.1.S1_at11/1110+1938793..1939827disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04210OsAffx.18121.1.S1_at11/1110+1945918..1948038hypothetical protein
LOC_Os10g04220OsAffx.20354.1.S1_at1/1110+1952461..1954923retrotransposon protein, putative, unclassified
LOC_Os10g04230NANA10+1955253..1957921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04240NANA10+1958414..1961373retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04250OsAffx.14826.1.S1_at1/1110+1964704..1967815Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46733.1.S1_at--937--4531Chr10:1939339..1939363 (25 bp)
GCCCGATGCGACGTCTTATGACATT
LOC_Os10g04190
Os.46733.1.S1_at--483--8891Chr10:1939312..1939336 (25 bp)
TGAGGATCAGCTCGCAAGCCATGAG
LOC_Os10g04190
Os.46733.1.S1_at--986--8111Chr10:1939228..1939252 (25 bp)
GGACGGCACTGCTTGTCAGGAGCCT
LOC_Os10g04190
Os.46733.1.S1_at--576--971Chr10:1939211..1939235 (25 bp)
AGGAGCCTGCTGTTGTGTCCATTGT
LOC_Os10g04190
Os.46733.1.S1_at--73--4671Chr10:1939110..1939134 (25 bp)
GCGTGGGTTACTGTGTCCCAGAACT
LOC_Os10g04190
Os.46733.1.S1_at--1047--5471Chr10:1939090..1939114 (25 bp)
GAACTATGACCTTGATGCCGTACTC
LOC_Os10g04190
Os.46733.1.S1_at--679--291Chr10:1939047..1939071 (25 bp)
ATAGACCCAGATTACAGGCAGCAAT
LOC_Os10g04190
Os.46733.1.S1_at--187--251Chr10:1938995..1939019 (25 bp)
ATATCAAGACACTGGCACGCTTTGG
LOC_Os10g04190
Os.46733.1.S1_at--581--7091Chr10:1938929..1938953 (25 bp)
GTCAAAGCAGCCCTCGCAGTATTGA
LOC_Os10g04190
Os.46733.1.S1_at--13--6011Chr10:1938903..1938927 (25 bp)
GAGACCTCCAATCTAAAGCGCACAG
LOC_Os10g04190
Os.46733.1.S1_at--175--2791Chr10:1938828..1938852 (25 bp)
AAGAGGTGTGTACATCCATCCATCC
LOC_Os10g04190
Target Sequence 
GCCCGATGCGACGTCTTATGACATTGCTGAGGATCAGCTCGCAAGCCATGAGCTTGGTATGAATGAGCCTGTAGGGATGG
AGAAGGCCATGAAGGATCTTGAGGAGTGGGTGGACGGCACTGCTTGTCAGGAGCCTGCTGTTGTGTCCATTGTTGGATTT
GGGGGTGTGGGGAAGACCACCATTGCCATGGCATTGTACAAGAAAGTCATGTATCAATTTGATTGCCGGGCGTGGGTTAC
TGTGTCCCAGAACTATGACCTTGATGCCGTACTCAATGATATTCTCAAGCAAATAGACCCAGATTACAGGCAGCAATGCA
GCAGCAAGACTGGAACCTCTGAGAATATCAAGACACTGGCACGCTTTGGAAGCAAATTGAAGCGAGACGTGCAGCGCACA
GGAAGTCTCCGTCAAAGCAGCCCTCGCAGTATTGAGGAGACCTCCAATCTAAAGCGCACAGAAACCACCGACAACAAACT
CGAAAGCCAAATAAAGAAGCTCCTGGATAAAAAGAGGTGTGTACATCCATCCATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis