Browse Element(s) Details


Os.18720.1.S1_at

Description gb:NM_194732.1
DB_XREF= gi:37530823
TID=Os.18720.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18720 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBb0004A06.4), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0418010/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein
LOC_Os10g04180Os.18720.1.S1_at10/1110+1933447..1936961NB-ARC domain containing protein, expressed
LOC_Os10g04190Os.46733.1.S1_at11/1110+1938793..1939827disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04210OsAffx.18121.1.S1_at11/1110+1945918..1948038hypothetical protein
LOC_Os10g04220OsAffx.20354.1.S1_at1/1110+1952461..1954923retrotransposon protein, putative, unclassified
LOC_Os10g04230NANA10+1955253..1957921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04240NANA10+1958414..1961373retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18720.1.S1_at--664--5651Chr10:1934207..1934231 (25 bp)
GACAGATACTCTAGAGCACCTCCGT
LOC_Os10g04180
Os.18720.1.S1_at--579--9151Chr10:1934178..1934202 (25 bp)
TGCCGCTGTTTTCTCTTACCTTTTC
LOC_Os10g04180
Os.18720.1.S1_at--433--8051Chr10:1934072..1934096 (25 bp)
GGAGATCTTTGTTCCAGGTGAAGGA
LOC_Os10g04180
Os.18720.1.S1_at--331--10731Chr10:1934019..1934043 (25 bp)
TTGCACCTCTTGTTCCAAAGCTAGG
LOC_Os10g04180
Os.18720.1.S1_at--238--2711Chr10:1934002..1934026 (25 bp)
AAGCTAGGCTTCTGTCACAATGCAA
LOC_Os10g04180
Os.18720.1.S1_at--1109--2991Chr10:1933984..1934008 (25 bp)
AATGCAATGCCAGCCCTTGAGATGA
LOC_Os10g04180
Os.18720.1.S1_at--228--3252Chr11:10326743..10327166 (25 bp)
CAAGCGTTTGAAGGCCTATTTGGCA
NONE
Os.18720.1.S1_at--647--8431Chr10:1933933..1933957 (25 bp)
GGCCTATTTGGCATTGACACGCTAG
LOC_Os10g04180
Os.18720.1.S1_at--818--9151Chr10:1933893..1933917 (25 bp)
TGCGCCTCAGAGAAGCTAAACCAAG
LOC_Os10g04180
Os.18720.1.S1_at--821--51NONE
ATTGATCACACATTTCACTTCTTGA
NONE
Os.18720.1.S1_at--728--3971Chr10:1933711..1933735 (25 bp)
CGGTCTTTGCCATCGAGTTTATATA
LOC_Os10g04180
Target Sequence 
GACAGATACTCTAGAGCACCTCCGTGCCCTGCCGCTGTTTTCTCTTACCTTTTCTTTCTCATTTGGTGAGATGGAGAAGG
ATCAGGACAAAAAGATGAAGGACATCATCGAGGACAACAAATCACTGTCCGATGGGGAGATCTTTGTTCCAGGTGAAGGA
TTCAAGAGTCTTAAGCTACTTCGCTTCTTTGCACCTCTTGTTCCAAAGCTAGGCTTCTGTCACAATGCAATGCCAGCCCT
TGAGATGATTGAGATGCAGTTTCAAGCGTTTGAAGGCCTATTTGGCATTGACACGCTAGGAAATCTCAAAGGGGTGCGCC
TCAGAGAAGCTAAACCAAGAGAAGAGGATAAGCAAACCGCTCAAATAAATGACCTGTTGGTACGAGATTTGAAAGATAGC
ACTGAGGGACTGAAGGTNATCATTGATCACACATTTCACTTCTTGAAAGGTCGAAAGATATTGGTGGCTACCGCACCGAC
CAATCGTTCTCAGAACCTCGGTCTTTGCCATCGAGTTTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis