Browse Element(s) Details


Os.46805.1.S1_at

Description gb:AK110763.1
DB_XREF= gi:32995972
TID=Os.46805.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipase (OSJNBa0011L09.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-H11, full insert sequence.
FL= gb:AK110763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2542010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g478601/11tRNA synthetases class I family protein, expressed
LOC_Os03g459701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein
LOC_Os10g25420Os.46805.2.S1_x_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.2.S1_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.1.S1_at10/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed
LOC_Os10g25450OsAffx.18396.1.S1_at11/1110+12828966..12832148Subtilisin N-terminal Region family protein, expressed
LOC_Os10g25465NANA10+12833523..12834090NA

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46805.1.S1_at--1143--2091Chr10:12812939..12812963 (25 bp)
ACATGCCCGAAATTTGGAGGGATTT
LOC_Os10g25420
Os.46805.1.S1_at--558--2831Chr10:12812980..12813004 (25 bp)
AAGTGCCACGAAGGTACGAGCGTAC
LOC_Os10g25420
Os.46805.1.S1_at--826--1631Chr10:12812998..12813022 (25 bp)
AGCGTACGGCTCTAAGGGAATAATT
LOC_Os10g25420
Os.46805.1.S1_at--770--2991Chr10:12813023..12813047 (25 bp)
AATGATTGTGCATCCATTAGTCAAT
LOC_Os10g25420
Os.46805.1.S1_at--654--7331Chr10:12813030..12813054 (25 bp)
GTGCATCCATTAGTCAATTATGTGT
LOC_Os10g25420
Os.46805.1.S1_at--377--5491Chr10:12813085..12813109 (25 bp)
GAACATTGTTGTGTGATGGGCTGAT
LOC_Os10g25420
Os.46805.1.S1_at--1127--791Chr10:12813100..12813124 (25 bp)
ATGGGCTGATGGCAATGTTTTTGTT
LOC_Os10g25420
Os.46805.1.S1_at--459--8754Chr10:12813130..12813154 (25 bp)
TGTATAAAATGTACTCCCTCCTTCC
LOC_Os10g25420
Os.46805.1.S1_at--147--9311Chr10:12813144..12813167 (24 bp)
TCCCTCCTTCCGTATTATAAGTAAT
LOC_Os10g25420
Os.46805.1.S1_at--1064--3111NONE
AATTAGGAAGGCAACCCGCGCGGAT
NONE
Os.46805.1.S1_at--1017--2611Chr10:12813178..12813202 (25 bp)
AACCCGCGCGGATGCGCGGGAATCT
LOC_Os10g25420
Target Sequence 
ACATGCCCGAAATTTGGAGGGATTTTACGGGTTTTTTAAAAAAGTGCCACGAAGGTACGAGCGTACGGCTCTAAGGGAAT
AATTAATGATTGTGCATCCATTAGTCAATTATGTGTGTGATGATGATGTCAATGCAAAGGGGAAAAGAACATTGTTGTGT
GATGGGCTGATGGCAATGTTTTTGTTTCCTTTGTATAAAATGTACTCCCTCCTTCCGTATTATAAGTAATTAGGAAGGCA
ACCCGCGCGGATGCGCGGGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis