Browse Element(s) Details


OsAffx.8162.1.S1_at

Description tigr:9638.m02146
TID=OsAffx.8162.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2538011/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein
LOC_Os10g25420Os.46805.2.S1_x_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.2.S1_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.1.S1_at10/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8162.1.S1_at--457--10311Chr10:12794125..12794149 (25 bp)
TTTCGGCGAGATCGGATTCAACGAC
LOC_Os10g25380
OsAffx.8162.1.S1_at--747--5071Chr10:12794178..12794202 (25 bp)
GCACCGTCGACGTTGCGGCGAGCTT
LOC_Os10g25380
OsAffx.8162.1.S1_at--59--7511Chr10:12795459..12795483 (25 bp)
GTGGTCGCCGGCATGATACCAATTG
LOC_Os10g25380
OsAffx.8162.1.S1_at--442--9971Chr10:12795475..12795499 (25 bp)
TACCAATTGGATGCGAGCCGGAGAT
LOC_Os10g25380
OsAffx.8162.1.S1_at--46--5011Chr10:12795522..12795546 (25 bp)
GCAGGCAACTACTACGACCCGGCGT
LOC_Os10g25380
OsAffx.8162.1.S1_at--847--9051Chr10:12795552..12795576 (25 bp)
TGCATCACGCGGTTCAACGACCTCG
LOC_Os10g25380
OsAffx.8162.1.S1_at--749--9011Chr10:12795583..12795607 (25 bp)
TGCACAACCGTGAGCTGCAGCGGGC
LOC_Os10g25380
OsAffx.8162.1.S1_at--617--10111Chr10:12795654..12795678 (25 bp)
TATGCCGACCTTTACGGTCCAGTCG
LOC_Os10g25380
OsAffx.8162.1.S1_at--324--7231Chr10:12795687..12795709 (23 bp)
GTCGCTTCGCCCAAAGAATACGGGT
LOC_Os10g25380
OsAffx.8162.1.S1_at--700--7931Chr10:12795986..12796010 (25 bp)
GGATTCTGCGCCACACCAGGGTCGA
LOC_Os10g25380
OsAffx.8162.1.S1_at--1062--7091Chr10:12796042..12796066 (25 bp)
GTCATGGGACGGAATCCACTACACG
LOC_Os10g25380
Target Sequence 
TTTCGGCGAGATCGGATTCAACGACTACTCTTTCGCCCTCTCCGCCGGCAACGGCACCGTCGACGTTGCGGCGAGCTTGG
TGCCCGACATCATCGCCGTCATCCGTTCGGCCGTCACTGCCGTGATCGCCGCCGGAGCAAGGACGGTGGTGGTCGCCGGC
ATGATACCAATTGGATGCGAGCCGGAGATGCTTGCCCTCTTCCCCGGTGGCGCAGGCAACTACTACGACCCGGCGTCCGG
CTGCATCACGCGGTTCAACGACCTCGCCGAGCTGCACAACCGTGAGCTGCAGCGGGCGCTCCACGAGCTCCGCCGAGCCC
ACCCCGGCGCCACCGCCGTCCGCTATGCCGACCTTTACGGTCCAGTCGCCGCAGCTGTCGCTTCGCCCAAAGAATACGGG
TTTGGGAGCTCGCCGTTGGCGGCATGCTGCGGCAGCGGCGGTGAGCCGTACAACTTCAACGCCAACTTCACGGGATTCTG
CGCCACACCAGGGTCGACGGTGTGCGCGGACGGCCCATCATCGTCGGTGTCATGGGACGGAATCCACTACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis