Browse Element(s) Details


OsAffx.30527.1.S1_at

Description gb:NM_196303.1
DB_XREF= gi:37533965
TID=OsAffx.30527.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0068A07.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2533011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30527.1.S1_at--982--2351Chr10:12769609..12769633 (25 bp)
AAACCGATGCGCGAAGATACCAGTC
LOC_Os10g25330
OsAffx.30527.1.S1_at--319--1791Chr10:12769611..12769635 (25 bp)
ACCGATGCGCGAAGATACCAGTCAG
LOC_Os10g25330
OsAffx.30527.1.S1_at--331--6351Chr10:12769614..12769638 (25 bp)
GATGCGCGAAGATACCAGTCAGCGA
LOC_Os10g25330
OsAffx.30527.1.S1_at--944--9151Chr10:12769616..12769640 (25 bp)
TGCGCGAAGATACCAGTCAGCGACA
LOC_Os10g25330
OsAffx.30527.1.S1_at--174--5351Chr10:12769621..12769645 (25 bp)
GAAGATACCAGTCAGCGACAGACGA
LOC_Os10g25330
OsAffx.30527.1.S1_at--337--311Chr10:12769625..12769649 (25 bp)
ATACCAGTCAGCGACAGACGAGAAG
LOC_Os10g25330
OsAffx.30527.1.S1_at--85--1171Chr10:12769630..12769654 (25 bp)
AGTCAGCGACAGACGAGAAGGTCGT
LOC_Os10g25330
OsAffx.30527.1.S1_at--704--1451Chr10:12769645..12769669 (25 bp)
AGAAGGTCGTAGTGGTGATGAAACC
LOC_Os10g25330
OsAffx.30527.1.S1_at--528--4031Chr10:12769652..12769676 (25 bp)
CGTAGTGGTGATGAAACCAGTCGGC
LOC_Os10g25330
OsAffx.30527.1.S1_at--895--8491Chr10:12769764..12769785 (22 bp)
TGGCAGACGAAGTTAGCCGGCGTTT
LOC_Os10g25330
OsAffx.30527.1.S1_at--919--4991Chr10:12769766..12770079 (25 bp)
GCAGACGAAGTTAGCCGGCGTTTCC
LOC_Os10g25330
Target Sequence 
AAACCGATGCGCGAAGATACCAGTCAGCGACAGACGAGAAGGTCGTAGTGGTGATGAAACCAGTCGGCGGCAGACAAGGC
GGCCGGTGGTGAAGACGTGGACGCCCATCAATGGTGGTGTGACCAACCAACCGTGTAGACGAGGACACCAGTCGGTGGCA
GACGAAGTTAGCCGGCGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis