Browse Element(s) Details


OsAffx.30528.1.S1_at

Description tigr:9638.m02143
TID=OsAffx.30528.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GDSL-like LipaseAcylhydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2534010/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25300Os.46392.1.S1_s_at11/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.1.S1_at9/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_x_at8/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.40388.2.S1_s_at3/1110+12749285..12752443expressed protein
LOC_Os10g25300Os.4648.1.S1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25300OsAffx.19167.1.A1_at1/1110+12749285..12752443expressed protein
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30528.1.S1_at--460--7191Chr10:12775841..12775865 (25 bp)
GTCGGCGTCATTCGATCAGCCGTGA
LOC_Os10g25340
OsAffx.30528.1.S1_at--554--7391Chr10:12775984..12776008 (25 bp)
GTGATCACCGGGATGATACCGCTGG
LOC_Os10g25340
OsAffx.30528.1.S1_at--680--9011Chr10:12776077..12776101 (25 bp)
TGCAATGCGCGGTTCAACAAGCTCG
LOC_Os10g25340
OsAffx.30528.1.S1_at--973--4371NONE
GCCAAATACGGTTTCGGCGACACGC
NONE
OsAffx.30528.1.S1_at--791--571Chr10:12776869..12776893 (25 bp)
ATCCATCCAAGTACGTCTCCTGGGA
LOC_Os10g25340
OsAffx.30528.1.S1_at--815--7611Chr10:12776890..12776914 (25 bp)
GGGACGGGATCCATTACACGGAAGC
LOC_Os10g25340
OsAffx.30528.1.S1_at--359--8971Chr10:12776917..12776941 (25 bp)
TGAACAAGTTCGTGGCTCGTTCCAT
LOC_Os10g25340
OsAffx.30528.1.S1_at--431--9391Chr10:12776933..12776957 (25 bp)
TCGTTCCATGCTAAGGAGAGCCCTA
LOC_Os10g25340
OsAffx.30528.1.S1_at--96--6011Chr10:12776948..12776972 (25 bp)
GAGAGCCCTAATACCGATGCCCAAA
LOC_Os10g25340
OsAffx.30528.1.S1_at--151--3051Chr10:12776976..12777000 (25 bp)
AATCCGTCCTTGTCTATGCCGTTAT
LOC_Os10g25340
OsAffx.30528.1.S1_at--935--591Chr10:12776991..12777015 (25 bp)
ATGCCGTTATCAAGTTCACGCGAAC
LOC_Os10g25340
Target Sequence 
GTCGGCGTCATTCGATCAGCCGTGATCGACGCCATCGTCGCCGGAGCAAGAACGGTGGTGATCACCGGGATGATACCGCT
GGGCTGCGAGCCGCAGCTGCTCGCCCTGTTCCCCGCGGGCTCCGCCGCCGACTACGACCCGGACACCGGCTGCAATGCGC
GGTTCAACAAGCTCGCCGAGGTGCACAACCGCGAGCTGACCCGGATGCTCCGGCAGCTCCGGCGCGCGTTCCCCGCCGCC
GCCGTCCACTACGCCGACTTCTACCGCCCCGTCACCGCCATCATCGCCTCTCCGGCCAAATACGGTTTCGGCGACACGCC
GTTGGCGGCGTGCTGTGGCGGCGGCGGCAACCCCTACAACTTCGACTTCGCGGCGTTCTGCACCTTGCGGGCGTCGACGC
TGTGCGCCGATCCATCCAAGTACGTCTCCTGGGACGGGATCCATTACACGGAAGCGGTGAACAAGTTCGTGGCTCGTTCC
ATGCTAAGGAGAGCCCTAATACCGATGCCCAAACCCAATCCGTCCTTGTCTATGCCGTTATCAAGTTCACGCGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis