Browse Element(s) Details


Os.46844.1.S1_at

Description gb:AK108245.1
DB_XREF= gi:32993454
TID=Os.46844.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipase (OSJNBa0068A07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-H05, full insert sequence.
FL= gb:AK108245.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2540011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein
LOC_Os10g25420Os.46805.2.S1_x_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.2.S1_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.1.S1_at10/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46844.1.S1_at--1102--2199Chr11:8344745..8344764 (20 bp)
ACAACTTCGACATGGCGGCATTCTG
NONE
Os.46844.1.S1_at--594--1791Chr10:12801562..12801586 (25 bp)
ACCGAGGCGGCCAACAGGCACATCG
LOC_Os10g25400
Os.46844.1.S1_at--230--10091Chr10:12801683..12801707 (25 bp)
TAGGGTGCTCTTAGACTGAGTATAC
LOC_Os10g25400
Os.46844.1.S1_at--428--9931Chr10:12801705..12801729 (25 bp)
TACGTGGATGGCTGGGATAGCTTCC
LOC_Os10g25400
Os.46844.1.S1_at--216--7651Chr10:12801718..12801742 (25 bp)
GGGATAGCTTCCACGTGGAGGCCCA
LOC_Os10g25400
Os.46844.1.S1_at--17--1831Chr10:12801761..12801785 (25 bp)
ACGCCCTCTTGCTGAACATGTGGAT
LOC_Os10g25400
Os.46844.1.S1_at--499--9011Chr10:12801785..12801809 (25 bp)
TGAATTGATCCATCACCTTTCTGTT
LOC_Os10g25400
Os.46844.1.S1_at--1106--3351Chr10:12801798..12801822 (25 bp)
CACCTTTCTGTTTTGTTGACCAGTG
LOC_Os10g25400
Os.46844.1.S1_at--159--10751Chr10:12801810..12801834 (25 bp)
TTGTTGACCAGTGAAGCAGACTACT
LOC_Os10g25400
Os.46844.1.S1_at--1006--1511Chr10:12801824..12801848 (25 bp)
AGCAGACTACTGTTGGCTGTTGCCG
LOC_Os10g25400
Os.46844.1.S1_at--109--4751Chr10:12801839..12801863 (25 bp)
GCTGTTGCCGTCAGACATTTGGGCA
LOC_Os10g25400
Target Sequence 
ACAACTTCGACATGGCGGCATTCTGCGGCGCGGCGGGGTCGACGGCGTGCGCGGACCCGTCGGCGTACGTGTCGTGGGAC
GGCGTGCACTTCACCGAGGCGGCCAACAGGCACATCGCCTGCGCCGTGCTGGAGGCCGGCGGCGGCGCACCGCCGGCCGT
GGCAACGCCGCTGGCGACGTGGTCGGCGGCGGCGGAGGCTGGACGTAGTAGGATAGGGTGCTCTTAGACTGAGTATACGT
GGATGGCTGGGATAGCTTCCACGTGGAGGCCCACGGTGAGCCCGTGGCCCTACGCCCTCTTGCTGAACATGTGGATGAAT
TGATCCATCACCTTTCTGTTTTGTTGACCAGTGAAGCAGACTACTGTTGGCTGTTGCCGTCAGACATTTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis