Browse Element(s) Details


Os.11059.1.S1_at

Description gb:AK072853.1
DB_XREF= gi:32982876
TID=Os.11059.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.11059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0068A07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135L10, full insert sequence.
FL= gb:AK061008.1 gb:AK072853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2536011/11signal peptide peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25310Os.46838.1.S1_at10/1110+12757461..12760085SPX domain containing protein, expressed
LOC_Os10g25320Os.17550.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.17550.2.S1_x_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.56122.1.S1_at11/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25320Os.22711.1.A1_at1/1110+12759672..12765320Initiation factor 2 subunit family protein, expressed
LOC_Os10g25330OsAffx.30527.1.S1_at11/1110+12769577..12770105hypothetical protein
LOC_Os10g25340OsAffx.30528.1.S1_at10/1110+12773386..12777053GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25349OsAffx.7080.1.S1_x_at1/1110+12779884..12780633hypothetical protein
LOC_Os10g25360Os.11059.1.S1_at11/1110+12781352..12783830signal peptide peptidase family protein, expressed
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11059.1.S1_at--199--1171Chr10:12782745..12782769 (25 bp)
AGTCAAGCTTGTCTTCCCCAGGAGT
LOC_Os10g25360
Os.11059.1.S1_at--1083--8111Chr10:12782685..12782709 (25 bp)
GGACTATATGATGCTCGGCCTTGGA
LOC_Os10g25360
Os.11059.1.S1_at--354--1411Chr10:12782024..12782254 (25 bp)
AGACATGGCCATTCCAGGGATGCTT
LOC_Os10g25360
Os.11059.1.S1_at--521--1071Chr10:12782009..12782033 (25 bp)
AGGGATGCTTCTAGCTCTTGTACTC
LOC_Os10g25360
Os.11059.1.S1_at--1091--3611Chr10:12781993..12782017 (25 bp)
CTTGTACTCTCATTTGATCACCGGA
LOC_Os10g25360
Os.11059.1.S1_at--77--6131Chr10:12781955..12781979 (25 bp)
GAGTGTTTCACAAGACATGCCTCCC
LOC_Os10g25360
Os.11059.1.S1_at--40--811Chr10:12781890..12781914 (25 bp)
ATGGTGTTGGCTTGGTAACGGCTTT
LOC_Os10g25360
Os.11059.1.S1_at--564--8731Chr10:12781643..12781848 (25 bp)
TGTACCTGGTACCATCAACGCTTGG
LOC_Os10g25360
Os.11059.1.S1_at--628--3251Chr10:12781628..12781652 (25 bp)
CAACGCTTGGGCCTGTTATGTATAT
LOC_Os10g25360
Os.11059.1.S1_at--381--9371Chr10:12781492..12781516 (25 bp)
TCGACGTCCTTGATGTAATCTGATT
LOC_Os10g25360
Os.11059.1.S1_at--120--2891Chr10:12781408..12781432 (25 bp)
AAGGTTATACCCTATTGTTCTCGCA
LOC_Os10g25360
Target Sequence 
AGTCAAGCTTGTCTTCCCCAGGAGTTTGATGGGTGGGCTTGCTCCAGGAAGCAGTCCTGGGGACTATATGATGCTCGGCC
TTGGAGACATGGCCATTCCAGGGATGCTTCTAGCTCTTGTACTCTCATTTGATCACCGGAAGATCAAAGACATGAGTGTT
TCACAAGACATGCCTCCCTCGAAACAGCGGAAATATGTATGGTATGCGCTGACAGGTTATGGTGTTGGCTTGGTAACGGC
TTTGGCTGCTGGGATCTTATCCCAGTCTCCCCAGCCTGCTTTACTGTACCTGGTACCATCAACGCTTGGGCCTGTTATGT
ATATGTCATGGTTGAGGAACGAGCTATGGGAGCTATGGGAAGGATCCAGGCCAATTATAAACGACAAAGCTCATTTGTTG
GAGGTTTAAAATTCAACAGGACGTGAAAAAAGGTCTCGACGTCCTTGATGTAATCTGATTACAATTTATTTCAGCCATAG
TCTAAAGGAGAATATTTATAAGGTAGAATGCAGTGATGTAAGGTTATACCCTATTGTTCTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis