Browse Element(s) Details


Os.46805.2.S1_x_at

Description gb:NM_196312.1
DB_XREF= gi:37533983
TID=Os.46805.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46805 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative lipase (OSJNBa0011L09.30), mRNA.
PROD=putative lipase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2542011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g353701/11Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25380OsAffx.8162.1.S1_at11/1110+12791795..12796114GDSL-like Lipase/Acylhydrolase family protein
LOC_Os10g25400Os.46844.1.S1_at11/1110+12800005..12801899GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25410OsAffx.30529.1.S1_at11/1110+12805802..12806286hypothetical protein
LOC_Os10g25420Os.46805.2.S1_x_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.2.S1_at11/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25420Os.46805.1.S1_at10/1110+12810970..12813202GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g25430NANA10+12819452..12822562serine-threonine protein phosphatase, putative, expressed
LOC_Os10g25450OsAffx.18396.1.S1_at11/1110+12828966..12832148Subtilisin N-terminal Region family protein, expressed
LOC_Os10g25465NANA10+12833523..12834090NA

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016298molecular_functionlipase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46805.2.S1_x_at--360--4151Chr10:12811943..12811967 (25 bp)
CGCGGGTGCTCGAGCTCTTCAAGCT
LOC_Os10g25420
Os.46805.2.S1_x_at--804--1571Chr10:12811955..12811979 (25 bp)
AGCTCTTCAAGCTCAAGCACGGCCG
LOC_Os10g25420
Os.46805.2.S1_x_at--972--5771Chr10:12811993..12812017 (25 bp)
GACGACAGCGACTACGACGCCGCGA
LOC_Os10g25420
Os.46805.2.S1_x_at--362--5831Chr10:12812016..12812040 (25 bp)
GACCGGCTGCCTGAAGAGCTTCAAC
LOC_Os10g25420
Os.46805.2.S1_x_at--189--4591Chr10:12812166..12812672 (25 bp)
GCGCAGATACGTCTCCTTCTTGCTT
LOC_Os10g25420
Os.46805.2.S1_x_at--21--331Chr10:12812658..12812678 (21 bp)
ATACGTCTCCTTCTTGCTTCGTGTT
LOC_Os10g25420
Os.46805.2.S1_x_at--880--10552Chr10:12812664..12812688 (25 bp)
TTCTTGCTTCGTGTTCATGGCGGCG
LOC_Os10g25420
Os.46805.2.S1_x_at--1004--3491Chr10:12812679..12812703 (25 bp)
CATGGCGGCGTATGCTGCAGGGTTC
LOC_Os10g25420
Os.46805.2.S1_x_at--13--9931Chr10:12812814..12812838 (25 bp)
TACGTTTCGTGGGACGGGATACACT
LOC_Os10g25420
Os.46805.2.S1_x_at--16--1931Chr10:12812827..12812851 (25 bp)
ACGGGATACACTACACGGAGGCGGC
LOC_Os10g25420
Os.46805.2.S1_x_at--1043--8491Chr10:12812878..12812902 (25 bp)
TGGAAGGGCGGTACACCGTGCCACC
LOC_Os10g25420
Target Sequence 
CGCGGGTGCTCGAGCTCTTCAAGCTCAAGCACGGCCGCTCCACCGCCGGCGACGACAGCGACTACGACGCCGCGACCGGC
TGCCTGAAGAGCTTCAACGAGCTCGCCGAGCAGCACAACCGCGCGCTCACCGCCGCCCTGGACGAGCTCCGCCGCGCCCA
CCCTGGCACCGCCATCGTCTACGCCGACCTCTACCGCGCCGTCACCGACATCGCCGTCTCGCCGCGCAGATACGTCTCCT
TCTTGCTTCGTGTTCATGGCGGCGTATGCTGCAGGGTTCGGCGGCGAGCCGCTGTTCGCGTGCTGCGGCGGCGGCGGGGG
CCGTACAACGTGAGGCTGGCGGCGAGGTGCGGCGACGAGGGGACGGCGGCGTGCGGCGAGCCGTCGGAGTACGTTTCGTG
GGACGGGATACACTACACGGAGGCGGCCAACAGGGTGATCGCGCGTGGCATCGTGGAAGGGCGGTACACCGTGCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46805.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis