Browse Element(s) Details


Os.46814.1.S1_at

Description gb:AK110467.1
DB_XREF= gi:32995676
TID=Os.46814.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cellulose synthase D-like protein (OSJNBb0052C09.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-G08, full insert sequence.
FL= gb:AK110467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2026011/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20230Os.20152.1.S2_at11/1110+9831493..9833702expressed protein
LOC_Os10g20230Os.20152.1.S1_a_at11/1110+9831493..9833702expressed protein
LOC_Os10g20240Os.8527.2.S1_x_at11/1110+9839135..9843093expressed protein
LOC_Os10g20240Os.8527.1.S1_at11/1110+9839135..9843093expressed protein
LOC_Os10g20250Os.13479.1.S1_at11/1110+9843145..9845939expressed protein
LOC_Os10g20260Os.46814.1.S1_at11/1110+9849044..9856261Cellulose synthase family protein, expressed
LOC_Os10g20270Os.44418.2.S1_at7/1110+9858684..9863139hypothetical protein
LOC_Os10g20270Os.44418.1.S1_at1/1110+9858684..9863139hypothetical protein
LOC_Os10g20280OsAffx.20490.1.S1_at11/1110+9866121..9869681transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g20290OsAffx.18868.1.S1_at11/1110+9872308..9872983hypothetical protein
LOC_Os10g20300OsAffx.26996.1.S1_x_at1/1110+9877039..9879281hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46814.1.S1_at--730--8151Chr10:9849611..9849635 (25 bp)
GGAAATATCGTTCAAGCTGACCTCG
LOC_Os10g20260
Os.46814.1.S1_at--508--2691Chr10:9849598..9849622 (25 bp)
AAGCTGACCTCGAAGCATCTCGCGT
LOC_Os10g20260
Os.46814.1.S1_at--400--9331Chr10:9849558..9849582 (25 bp)
TCGCCGGTAAGGATAGGCAGTACGC
LOC_Os10g20260
Os.46814.1.S1_at--542--8671Chr10:9849366..9849390 (25 bp)
TGTGGGTGGTGGTGCATCTCTACCC
LOC_Os10g20260
Os.46814.1.S1_at--225--8071Chr10:9849315..9849339 (25 bp)
GGAGCAAGGCGGTGCGCCCCATTCT
LOC_Os10g20260
Os.46814.1.S1_at--915--4911Chr10:9849255..9849279 (25 bp)
GCTTCCTTTGTCTCTTGTTACAATT
LOC_Os10g20260
Os.46814.1.S1_at--105--8291Chr10:9849216..9849240 (25 bp)
GGCATTCTTAATTTCGACCCTACAA
LOC_Os10g20260
Os.46814.1.S1_at--538--5211Chr10:9849186..9849210 (25 bp)
GAATTACTACTTTTCACTCACTAGG
LOC_Os10g20260
Os.46814.1.S1_at--490--7731Chr10:9849118..9849142 (25 bp)
GGTGTTACACTTTTAACCCATGTTG
LOC_Os10g20260
Os.46814.1.S1_at--488--2611Chr10:9849104..9849128 (25 bp)
AACCCATGTTGCTCATTGTTTCTTT
LOC_Os10g20260
Os.46814.1.S1_at--531--10311Chr10:9849086..9849110 (25 bp)
TTTCTTTTCTCTATGGTGTTACAAG
LOC_Os10g20260
Target Sequence 
GGAAATATCGTTCAAGCTGACCTCGAAGCATCTCGCGTCGTCGGCGACGCCGGTCGCCGGTAAGGATAGGCAGTACGCGG
AGCTGTACGCCGTGAGGTGGACGGCGCTGATGGCGCCGACGGCGGCGGCTCTGGCAGTGAACGTGGCGTCGATGGCGGCG
GCGGGTGGTGGTGGCCGGTGGTGGTGGTGGGACGCTCCGTCGGCGGCGGCGGCGGCGGCGGCGGNACTCCCGGTGGCGTT
CAACGTGTGGGTGGTGGTGCATCTCTACCCGTTCGCGCTCGGGCTGATGGGTCGCCGGAGCAAGGCGGTGCGCCCCATTC
TGTTCCTGTTCGCCGTCGTCGCCTACCTCGCCGTCCGCTTCCTTTGTCTCTTGTTACAATTCCATANGGCTTAAAGGCAT
TCTTAATTTCGACCCTACAATTACAGAATTACTACTTTTCACTCACTAGGAATTAAGCTGGAATTCACGAAGCTAAATGG
TATAGATATTTGGGGTGTTACACTTTTAACCCATGTTGCTCATTGTTTCTTTTCTCTATGGTGTTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis