Browse Element(s) Details


Os.4682.1.S1_a_at

Description gb:AK061921.1
DB_XREF= gi:32971939
TID=Os.4682.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B09, full insert sequence.
FL= gb:AK061921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5673011/11Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative
LOC_Os04g56710Os.21764.1.S1_at11/114+33595092..33599676GTP cyclohydrolase I family protein, expressed
LOC_Os04g56720Os.18550.1.S1_at11/114+33603380..33609512Regulator of chromosome condensation family protein, expressed
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4682.1.S1_a_at--381--8251Chr04:33610700..33610724 (25 bp)
GGCACTTCTCTTCTAGACAGTATGA
LOC_Os04g56730
Os.4682.1.S1_a_at--712--8051Chr04:33610570..33610594 (25 bp)
GGAGAGTCTGACATCTACAGCTATA
LOC_Os04g56730
Os.4682.1.S1_a_at--542--7791Chr04:33610418..33610442 (25 bp)
GGTCGATCAACTTTTTCTTCTACAA
LOC_Os04g56730
Os.4682.1.S1_a_at--1077--7371Chr04:33610374..33610398 (25 bp)
GTGAGCTTTCGTTGCAGTTGTATAA
LOC_Os04g56730
Os.4682.1.S1_a_at--791--10451Chr04:33610235..33610259 (25 bp)
TTACCAGTGCACCATCCGATGGTGA
LOC_Os04g56730
Os.4682.1.S1_a_at--985--351Chr04:33610180..33610204 (25 bp)
ATAATTGACACCTTTCTGGCAGGAA
LOC_Os04g56730
Os.4682.1.S1_a_at--219--8931Chr04:33610153..33610177 (25 bp)
TGACCAACCAGTGTGGCATCCAGTT
LOC_Os04g56730
Os.4682.1.S1_a_at--1024--7471Chr04:33610143..33610167 (25 bp)
GTGTGGCATCCAGTTGTGTAGTACC
LOC_Os04g56730
Os.4682.1.S1_a_at--862--9511Chr04:33610059..33610083 (25 bp)
TTAGCAGACTTCACCTGTACCGAGG
LOC_Os04g56730
Os.4682.1.S1_a_at--751--5191Chr04:33609978..33610002 (25 bp)
GAATTGGCATTTTACTTGGTGACCT
LOC_Os04g56730
Os.4682.1.S1_a_at--1141--5591Chr04:33609932..33609956 (25 bp)
GAAATTCTCGTTCTATGCAGTTGAA
LOC_Os04g56730
Target Sequence 
GGCACTTCTCTTCTAGACAGTATGACTAATGTCATTGATGAGGTTATCAAAATCGGAGAGTCTGACATCTACAGCTATAA
TCCAGACCAAGATGGAGATCCATTTCTTGAAAAGGGGGTCATATGGTCGATCAACTTTTTCTTCTACAATCGGAAGCTAA
AGCGAGTTGTGAGCTTTCGTTGCAGTTGTATAAGCAAAATATCAGGAGATGACTTCCTTACCAGTGCACCATCCGATGGT
GAAGAGGAAGATGCACTGATAGACATGGACATATAATTGACACCTTTCTGGCAGGAAAATGACCAACCAGTGTGGCATCC
AGTTGTGTAGTACCAGTATATATCATGTATGGCAGTTTGGCAGTTGCCAGTAGGAACTACAACCAGAATTTTCTTAGCAG
ACTTCACCTGTACCGAGGCCTGCATAATATTATGATTTGACAGCAGGAAATTCTGCGTTTCTAGCCTGAGACTTGAATTG
GCATTTTACTTGGTGACCTAAGCTAGTGTTTGTTGAGATCGAAATTCTCGTTCTATGCAGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4682.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis