Browse Element(s) Details


OsAffx.4196.1.S1_s_at

Description tigr:9632.m05534
TID=OsAffx.4196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Uncharacterised protein family (UPF0123)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5676011/11PHD finger-like domain protein 5A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4196.1.S1_s_at--712--9411Chr04:33637298..33637322 (25 bp)
TCGTCGTCGGTTCCTTCGCGCAGAT
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--957--4631Chr04:33637266..33637290 (24 bp)
GCGTCTCATACTCTTCGGTTAGCAT
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--785--10611Chr04:33635984..33636005 (22 bp)
TTCGGTTAGCATTCGACAGCCATGG
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--89--4951Chr04:33635917..33635941 (25 bp)
GCATTGCTATTGGTCGTTTGTGCGA
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--974--8671Chr04:33635867..33635891 (25 bp)
TGTGACTCGTATGTGCGCCCATGTA
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--684--751Chr04:33635847..33635871 (25 bp)
ATGTACGCTTGTCCGAGTCTGTGAT
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--897--451Chr04:33635768..33635792 (25 bp)
ATCTCAGATGCCTACTACTGCAAGG
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--210--6251Chr04:33635717..33635741 (25 bp)
GATGGATGTCCCAAGATTGTCAATC
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--409--7931Chr04:33635620..33635644 (25 bp)
GGATTTGTCTGGTCCATTTCCTCGC
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--51--8131Chr04:33635563..33635587 (25 bp)
GGACTTAAGGCGGACATCTTTGTAT
LOC_Os04g56760
OsAffx.4196.1.S1_s_at--838--7811Chr04:33635526..33635550 (25 bp)
GGTCTAGATTCTTAAGGCTGCATGT
LOC_Os04g56760
Target Sequence 
TCGTCGTCGGTTCCTTCGCGCAGATCGCCGCCGCGTCTCATACTCTTCGGTTAGCATTCGACAGCCATGGCAAAGCATCA
TCCTGATCTCATCATGTGCAGGAAGCAGCCTGGCATTGCTATTGGTCGTTTGTGCGAGAAATGTGATGGCAAGTGTGTCA
TCTGTGACTCGTATGTGCGCCCATGTACGCTTGTCCGAGTCTGTGATGAGTGCAACTATGGTTCCTTCCAGGGGAGGTGT
GTCATCTGTGGGGGGGTCGGCATCTCAGATGCCTACTACTGCAAGGAGTGCACTCAGCAGGAAAAGGACCGAGATGGATG
TCCCAAGATTGTCAATCTTGGAAGCGCCAAGACCGATCTCTTCTATGAACGAAAGAAGTATGGTTTTAAGAAGAGATGAT
CAGGAAGTTGGATTTGTCTGGTCCATTTCCTCGCTGTGTTTTCAGTCGCACTGATATGGTTGTTAAGGACTTAAGGCGGA
CATCTTTGTATTCTATGGAATATGGTCTAGATTCTTAAGGCTGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4196.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis