Browse Element(s) Details


OsAffx.14441.1.S1_at

Description tigr:9632.m05535
TID=OsAffx.14441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5677010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14441.1.S1_at--672--991Chr04:33637698..33637722 (25 bp)
AGGAGGCGACGGATTCGGTCTCTAC
LOC_Os04g56770
OsAffx.14441.1.S1_at--342--92Chr04:33637710..33637734 (25 bp)
ATTCGGTCTCTACGAAGCCGGAGGA
LOC_Os04g56770
OsAffx.14441.1.S1_at--686--1011Chr04:33637734..33637758 (25 bp)
AGGTTGCGGCTTACCAGAGCAGCGA
LOC_Os04g56770
OsAffx.14441.1.S1_at--344--5011Chr04:33637765..33637789 (25 bp)
GCAGGCGAAGCTACAGTCCATGCTC
LOC_Os04g56770
OsAffx.14441.1.S1_at--798--851Chr04:33637911..33637931 (21 bp)
ATGGCACCTCCTTCGGTACTGATGT
LOC_Os04g56770
OsAffx.14441.1.S1_at--435--5191Chr04:33638042..33638066 (25 bp)
GCAATGTTGAACACAGCCACTGTCA
LOC_Os04g56770
OsAffx.14441.1.S1_at--759--1311Chr04:33638118..33638142 (25 bp)
AGATGGGCCATCGTCATATCTCATG
LOC_Os04g56770
OsAffx.14441.1.S1_at--58--10171Chr04:33638703..33638832 (25 bp)
TATCAGATCCCTTCACAGCAAGTAG
LOC_Os04g56770
OsAffx.14441.1.S1_at--946--5551Chr04:33638842..33638866 (25 bp)
GAAAGAGATCCCAACACTACTACCA
LOC_Os04g56770
OsAffx.14441.1.S1_at--1034--3571Chr04:33638876..33638900 (25 bp)
CATATATGGTGCCTGACATGCTGGG
LOC_Os04g56770
OsAffx.14441.1.S1_at--612--1891NONE
ACGTTATATGTTTATTTCTCGCCGC
NONE
Target Sequence 
AGGAGGCGACGGATTCGGTCTCTACGAAGCCGGAGGAGGTTGCGGCTTACCAGAGCAGCGAGGCCAAGCAGGCGAAGCTA
CAGTCCATGCTCGCCGCCCTCCTCGACGACCCCATACTCGCCGACGTGCCCAGGAAGCCCTCCCTCGCCGACGTCGACAC
GCTGATCAACCTCGAGCTCGGCAGCGCCATGCGGCTAACCGTCGTCAAGCTGGATGGCACCTCCTTCGGTACTGATGTTG
CAATGTTGAACACAGCCACTGTCAAGGATTTGAAGATGGCTATCAGGAAGAAGACGGATGAGATTGAACAGGAAAAGATG
GGCCATCGTCATATCTCATGGTTTCTATTTTTCTTTATGGCTTTTTTTCAAGAACTATCAGATCCCTTCACAGCAAGTAG
TGATCACTGGAAAGAGATCCCAACACTACTACCACTAAATTTGCATATATGGTGCCTGACATGCTGGGGGTTTGAGCCAC
AGCCCACAGAATACGTTATATGTTTATTTCTCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis