Browse Element(s) Details


OsAffx.4197.1.S1_x_at

Description tigr:9632.m05538
TID=OsAffx.4197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pin1-type peptidyl-prolyl cistrans isomerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5680010/11Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g56760OsAffx.4196.1.S1_s_at11/114+33635333..33637490PHD finger-like domain protein 5A, putative, expressed
LOC_Os04g56770OsAffx.14441.1.S1_at10/114+33637664..33639994hypothetical protein
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein
LOC_Os04g56830OsAffx.4198.1.S1_at11/114+33665745..33666089hypothetical protein
LOC_Os04g56840Os.57058.1.S1_at11/114+33666474..33667985expressed protein
LOC_Os04g56850Os.48513.1.S1_a_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56850Os.48513.2.S1_x_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56870NANA4+33681965..33684183retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4197.1.S1_x_at--845--9091Chr04:33656868..33656892 (25 bp)
TGCTCCTCGGAGAGCCGCAGCCAAG
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--37--9451Chr04:33656862..33656886 (25 bp)
TCGGAGAGCCGCAGCCAAGGACGCC
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--709--4371Chr04:33656848..33656872 (25 bp)
CCAAGGACGCCAAGATAGGGACCGA
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--492--3211Chr04:33656847..33656871 (25 bp)
CAAGGACGCCAAGATAGGGACCGAA
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--64--5411Chr04:33656625..33656649 (25 bp)
GAAGCTGCGGGCCTCGCACATCCTG
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--683--2691Chr04:33656624..33656648 (25 bp)
AAGCTGCGGGCCTCGCACATCCTGA
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--1031--1591Chr04:33656623..33656647 (25 bp)
AGCTGCGGGCCTCGCACATCCTGAT
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--878--9131Chr04:33656620..33656644 (25 bp)
TGCGGGCCTCGCACATCCTGATCAA
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--1015--5871Chr04:33656474..33656498 (25 bp)
GAGCGCAAGTTCGAGGACGTCGCCA
LOC_Os04g56800
OsAffx.4197.1.S1_x_at--845--7751NONE
GGTGACCTAGGTCCATTTGAAAGAG
NONE
OsAffx.4197.1.S1_x_at--411--8911Chr04:33654459..33654483 (25 bp)
TGAGAAGGCAGTTCTTGCTCTGAAA
LOC_Os04g56800
Target Sequence 
TGCTCCTCGGAGAGCCGCAGCCAAGGACGCCAAGATAGGGACCGAAACCCCCGCCGCCGATGGCGACGCCGCCCGCAAGC
GGCCCAGCGCCGGCGACGCGCCCGCCCCAGCCCCCCTCGCCGACAAGCGCCACCGCCCCAACCCCCCGTCCTCCGGCTCC
CGCGACCGCGACCGCCACCACCGCCACGGCCACAGCCACAGCCACGGCCACGCCCGGCCGTCCACCGCGGGCGGCGGGGA
GAAGAAGCTGCGGGCCTCGCACATCCTGATCAAGCACGAGGGCTCCCGCCGCAAGGCCTCGTGGCGCGACCCCGAGGGCG
TCGCCATCTCCGCCACCACCCGCGACGACGCCGCCGACCTCGCGCGGGCCCTCCGCGAGAAGATCGTCGCCGGGGAGCGC
AAGTTCGAGGACGTCGCCACCGAGGAGTCCGACTGCAACTCCGCCAAGCGTGGGGGTGACCTAGGTCCATTTGAAAGAGG
CAAGATGCAGAAGGCTTTTGAGAAGGCAGTTCTTGCTCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4197.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis