Browse Element(s) Details


Os.57058.1.S1_at

Description gb:AK110837.1
DB_XREF= gi:32996046
TID=Os.57058.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B02, full insert sequence.
FL= gb:AK110837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5684011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein
LOC_Os04g56830OsAffx.4198.1.S1_at11/114+33665745..33666089hypothetical protein
LOC_Os04g56840Os.57058.1.S1_at11/114+33666474..33667985expressed protein
LOC_Os04g56850Os.48513.1.S1_a_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56850Os.48513.2.S1_x_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56870NANA4+33681965..33684183retrotransposon protein, putative, unclassified
LOC_Os04g56880NANA4+33685560..33686947Zinc knuckle family protein
LOC_Os04g56890NANA4+33689506..33692099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56894NANA4+33692849..33693242NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57058.1.S1_at--845--1591Chr04:33666995..33667019 (25 bp)
AGCTGCTGCTGGTGAAATCATCGTC
LOC_Os04g56840
Os.57058.1.S1_at--489--971Chr04:33666918..33666942 (25 bp)
AGGAGCCGTCGCGTGGCCTCGCAAT
LOC_Os04g56840
Os.57058.1.S1_at--253--4511Chr04:33666882..33666906 (25 bp)
GCCGACAAGGAGAGTGTACGCCCTC
LOC_Os04g56840
Os.57058.1.S1_at--665--10251Chr04:33666829..33666853 (25 bp)
TTTGCTCGCGTTCTTCGTCGGAAGG
LOC_Os04g56840
Os.57058.1.S1_at--228--8111Chr04:33666805..33666829 (25 bp)
GGACGAACAGTACCCCGCAGATTTG
LOC_Os04g56840
Os.57058.1.S1_at--222--1111Chr04:33666693..33666717 (25 bp)
AGTGTGTGCACGCAGCAATTCCTTT
LOC_Os04g56840
Os.57058.1.S1_at--787--4711Chr04:33666650..33666674 (25 bp)
GCTGGCTGACAGACAGCTCTGTTTA
LOC_Os04g56840
Os.57058.1.S1_at--634--10411Chr04:33666628..33666652 (25 bp)
TTATTGCTGTGTGTACGCTGTAGAA
LOC_Os04g56840
Os.57058.1.S1_at--1046--5331Chr04:33666606..33666630 (25 bp)
GAAGTTACACCGTTCTTGCAACAAA
LOC_Os04g56840
Os.57058.1.S1_at--680--10051Chr04:33666503..33666527 (25 bp)
TAGTACGACTAGTCCTGTTCTTCTG
LOC_Os04g56840
Os.57058.1.S1_at--541--9271Chr04:33666491..33666515 (25 bp)
TCCTGTTCTTCTGTTCTGGGAGGAG
LOC_Os04g56840
Target Sequence 
AGCTGCTGCTGGTGAAATCATCGTCGGCGACGTGCTTGTGATCGGCGTGGAGTGGAGGAAGACGAAGGTTGGCGACGAGG
AGCCGTCGCGTGGCCTCGCAATGTTGCGGCGGCGCCGACAAGGAGAGTGTACGCCCTCCCCGCCGCGCCGCGGCGGGTGG
GGTTGGTTTGCTCGCGTTCTTCGTCGGAAGGGACGAACAGTACCCCGCAGATTTGGGAGGAATTGGATTTGATTTTGGTA
AGACGGTAGAAATAATGGTGAGAGGTTTATGAATTTTTGGGGGACACGCCGGTGGCACGGGAAGTGTGTGCACGCAGCAA
TTCCTTTGCCTCGTTCCCGCTTCCCGCTGGCTGACAGACAGCTCTGTTTATTGCTGTGTGTACGCTGTAGAAGTTACACC
GTTCTTGCAACAAATTGAAAAACAAAAGATGCATTTATGAGCAGGGAGTAGGGAATAAACCCACTACCACCGGTATTTGT
TACGGAAACTACTAGTACGACTAGTCCTGTTCTTCTGTTCTGGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis