Browse Element(s) Details


OsAffx.4198.1.S1_at

Description tigr:9632.m05541
TID=OsAffx.4198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56780OsAffx.26640.1.S1_at11/114+33641309..33642359Homeobox domain containing protein
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein
LOC_Os04g56830OsAffx.4198.1.S1_at11/114+33665745..33666089hypothetical protein
LOC_Os04g56840Os.57058.1.S1_at11/114+33666474..33667985expressed protein
LOC_Os04g56850Os.48513.1.S1_a_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56850Os.48513.2.S1_x_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56870NANA4+33681965..33684183retrotransposon protein, putative, unclassified
LOC_Os04g56880NANA4+33685560..33686947Zinc knuckle family protein
LOC_Os04g56890NANA4+33689506..33692099retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4198.1.S1_at--1142--3351Chr04:33665798..33665822 (25 bp)
CACCGTTCGACGGAATGATCACGAT
LOC_Os04g56830
OsAffx.4198.1.S1_at--444--3951Chr04:33665808..33665832 (25 bp)
CGGAATGATCACGATGGTGGCTGCC
LOC_Os04g56830
OsAffx.4198.1.S1_at--601--2011Chr04:33665838..33665862 (25 bp)
ACTAACCAGCCTTGCCACGTTGGTG
LOC_Os04g56830
OsAffx.4198.1.S1_at--736--1671Chr04:33665845..33665869 (25 bp)
AGCCTTGCCACGTTGGTGTCGTCCG
LOC_Os04g56830
OsAffx.4198.1.S1_at--870--7191Chr04:33665862..33665886 (25 bp)
GTCGTCCGGCGATGGCGGTCATGGA
LOC_Os04g56830
OsAffx.4198.1.S1_at--42--831Chr04:33665882..33665906 (25 bp)
ATGGAGGAAGCTGCCTCTTCCTTCC
LOC_Os04g56830
OsAffx.4198.1.S1_at--614--3631Chr04:33665915..33665939 (25 bp)
CTTCGACCAAAGCTCAACGCGCTTT
LOC_Os04g56830
OsAffx.4198.1.S1_at--1031--2691Chr04:33665924..33665948 (25 bp)
AAGCTCAACGCGCTTTCTTGACCGC
LOC_Os04g56830
OsAffx.4198.1.S1_at--551--10571Chr04:33665965..33665989 (25 bp)
TTCTTTGTGCCCGAATTGGGAATGA
LOC_Os04g56830
OsAffx.4198.1.S1_at--808--5351Chr04:33665988..33666012 (25 bp)
GAAGATGGCAGTCGAGCATCGTCAA
LOC_Os04g56830
OsAffx.4198.1.S1_at--625--1151Chr04:33665997..33666021 (25 bp)
AGTCGAGCATCGTCAAGCCAAAGGT
LOC_Os04g56830
Target Sequence 
CACCGTTCGACGGAATGATCACGATGGTGGCTGCCACGACACTAACCAGCCTTGCCACGTTGGTGTCGTCCGGCGATGGC
GGTCATGGAGGAAGCTGCCTCTTCCTTCCTCCTCCCACTTCGACCAAAGCTCAACGCGCTTTCTTGACCGCCACTTCCTC
CCTCTTCTTCTTTGTGCCCGAATTGGGAATGAAGATGGCAGTCGAGCATCGTCAAGCCAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis