Browse Element(s) Details


Os.48513.1.S1_a_at

Description gb:AB071292.1
DB_XREF= gi:19352036
GEN=OsMP
TID=Os.48513.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48513 (NCBI UniGene Cluster)
DEF=Oryza sativa OsMP mRNA for Arabidopsis Monopteros-like protein, complete cds.
PROD=Arabidopsis Monopteros-like protein
FL= gb:AB071292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5685011/11Auxin response factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56790Os.15045.1.S1_at11/114+33650009..33653836TLD family protein, expressed
LOC_Os04g56800OsAffx.4197.1.S1_x_at10/114+33654393..33657050Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g56810OsAffx.14442.1.S1_at11/114+33658435..33658926hypothetical protein
LOC_Os04g56820OsAffx.14443.1.S1_at11/114+33663112..33663546hypothetical protein
LOC_Os04g56830OsAffx.4198.1.S1_at11/114+33665745..33666089hypothetical protein
LOC_Os04g56840Os.57058.1.S1_at11/114+33666474..33667985expressed protein
LOC_Os04g56850Os.48513.1.S1_a_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56850Os.48513.2.S1_x_at11/114+33669062..33675333Auxin response factor family protein, expressed
LOC_Os04g56870NANA4+33681965..33684183retrotransposon protein, putative, unclassified
LOC_Os04g56880NANA4+33685560..33686947Zinc knuckle family protein
LOC_Os04g56890NANA4+33689506..33692099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g56894NANA4+33692849..33693242NA

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0009942biological_processlongitudinal axis specification
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48513.1.S1_a_at--1155--691Chr04:33669701..33669725 (25 bp)
ATGAGTTGAGATCTGCCATCGCTTG
LOC_Os04g56850
Os.48513.1.S1_a_at--1017--3171Chr04:33669656..33669680 (25 bp)
AATTGGAGCATCCTGGCAGTTCAGA
LOC_Os04g56850
Os.48513.1.S1_a_at--79--8191Chr04:33669629..33669653 (25 bp)
GGAAGCTTGTATATGTCGACTACGA
LOC_Os04g56850
Os.48513.1.S1_a_at--816--5211Chr04:33669470..33669494 (25 bp)
GAATTCATCAACTGTGTCCGGTGCA
LOC_Os04g56850
Os.48513.1.S1_a_at--607--551Chr04:33669446..33669470 (25 bp)
ATCCGGATTTTGTCACCTTCAGAAG
LOC_Os04g56850
Os.48513.1.S1_a_at--870--651Chr04:33669310..33669334 (25 bp)
ATGCACATCCGAGAAGCTGTAGTTC
LOC_Os04g56850
Os.48513.1.S1_a_at--938--4731Chr04:33669295..33669319 (25 bp)
GCTGTAGTTCTCTGAATGCGTTGCA
LOC_Os04g56850
Os.48513.1.S1_a_at--139--3471Chr04:33669141..33669165 (25 bp)
CAGTGATTACTCATGCTTTGATGCA
LOC_Os04g56850
Os.48513.1.S1_a_at--1092--10251Chr04:33669125..33669149 (25 bp)
TTTGATGCATTTCCAACTTCCACTG
LOC_Os04g56850
Os.48513.1.S1_a_at--893--2051Chr04:33669110..33669134 (25 bp)
ACTTCCACTGTATGTTGCGAGCTAT
LOC_Os04g56850
Os.48513.1.S1_a_at--805--10411Chr04:33669071..33669095 (25 bp)
TTATTTGGTTCCTTACTTCACTCAG
LOC_Os04g56850
Target Sequence 
ATGAGTTGAGATCTGCCATCGCTTGCATGTTTGNTCTCCAGGGGAAATTGGAGCATCCTGGCAGTTCAGAGTGGAAGCTT
GTATATGTCGACTACGAAAATGATGTTCTTCTTGTCGGAGATGATCCATGGGAGGAATTCATCAACTGTGTCCGGTGCAT
CCGGATTTTGTCACCTTCAGAAGTACAACAGATGAGCGAGAATGGCATGCATGTTTTGAACGACTGTATTCAAGCAGCTT
AGTAGTACCATTTTCTGGATGAAGCTCTATATCGACATGAAGGCCACAAGAGAAATGCACATCCGAGAAGCTGTAGTTCT
CTGAATGCGTTGCATTACTGAATGTTAAGCTGATTTGTTGACACTTGACAGTAGTGTTTGTGGTAGAGACTTACAGGAAA
AAAAAAGGCTCATCTTTTGCAAGAAGACCAGGTAGGAAAGCCCAAGCTGTGGAAAATAGTGTGCAGTGATTACTCATGCT
TTGATGCATTTCCAACTTCCACTGTATGTTGCGAGCTATGTCGAATCAGAAACTTATTTGGTTCCTTACTTCACTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48513.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis