Browse Element(s) Details


Os.46829.1.S1_at

Description gb:AK109095.1
DB_XREF= gi:32994304
TID=Os.46829.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0039C14.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A08, full insert sequence.
FL= gb:AK109095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3169011/11hypothetical protein
LOC_Os10g317102/11hypothetical protein
LOC_Os10g317201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein
LOC_Os10g31680Os.9180.1.S1_at11/1110+16278418..16279130expressed protein
LOC_Os10g31690Os.46829.1.S1_at11/1110+16284309..16285065hypothetical protein
LOC_Os10g31700OsAffx.20289.1.S1_at11/1110+16287233..16288940hypothetical protein
LOC_Os10g31710Os.46829.1.S1_at2/1110+16291738..16292313hypothetical protein
LOC_Os10g31710Os.46669.1.A1_at1/1110+16291738..16292313hypothetical protein
LOC_Os10g31720Os.21894.1.S1_at9/1110+16296433..16297165expressed protein
LOC_Os10g31720Os.46829.1.S1_at1/1110+16296433..16297165expressed protein
LOC_Os10g31730Os.46669.1.A1_at7/1110+16305109..16305924expressed protein
LOC_Os10g31740NANA10+16309565..16311322hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46829.1.S1_at--320--11Chr10:16284834..16284858 (25 bp)
GGGTCCGGTAGCAGTAACCGTTATG
LOC_Os10g31690
Os.46829.1.S1_at--216--8631Chr10:16284781..16284805 (25 bp)
TGGTGGTGGCGGTTACAGCCAATAC
LOC_Os10g31690
Os.46829.1.S1_at--626--1212Chr10:16284684..16284708 (25 bp)
AGTTATGGCGGGTCATCCAGTGCTG
LOC_Os10g31690
Os.46829.1.S1_at--753--10611Chr10:16284577..16284601 (25 bp)
TTCTGGCTCTAGCTACGCTGATAAT
LOC_Os10g31690
Os.46829.1.S1_at--182--8552Chr10:16284544..16284568 (25 bp)
TGGAGGACCATACGCAAATGCTAAT
LOC_Os10g31690
Os.46829.1.S1_at--132--492Chr10:16291741..16291765 (25 bp)
ATCGGGATACGGTGACGCCAACCCT
LOC_Os10g31710
Os.46829.1.S1_at--661--5591Chr10:16284409..16284433 (25 bp)
GAAATTCTAGAAATGAGCCCAACAC
LOC_Os10g31690
Os.46829.1.S1_at--116--8932Chr10:16284396..16284420 (25 bp)
TGAGCCCAACACACCTTTGTTTGTT
LOC_Os10g31690
Os.46829.1.S1_at--255--10271Chr10:16284377..16284401 (25 bp)
TTTGTTGTCATGTCTACGATGTACA
LOC_Os10g31690
Os.46829.1.S1_at--1156--751Chr10:16284368..16284392 (25 bp)
ATGTCTACGATGTACAATTTGTTCT
LOC_Os10g31690
Os.46829.1.S1_at--205--6991Chr10:16284334..16284358 (25 bp)
GTACCTGTTCAATGTATTATGCAAC
LOC_Os10g31690
Target Sequence 
GGGTCCGGTAGCAGTAACCGTTATGGTGCTCATGCAAGTGGCGGAGGCGGAGGTGGTGGTGGCGGTTACAGCCAATACGG
TGGATCGGGATCTGGTAGCGGATATGGCACGGGCTCAGGCTCTAGCCAGACCTCTCAAAATAGATATTATAGTTATGGCG
GGTCATCCAGTGCTGGGGGTGCTGGTGCTGGTGGCGGCGCTGGACAAGCTGGTGGTTATTGGCCATCCAATGGTCAGGGG
TCTGGTAGTGGTACGGGTTCTGGCTCTAGCTACGCTGATAATAATTACTATGGAGGACCATACGCAAATGCTAATGCTGG
TGGCAATGGTGGTGGTAACGGTCAAGGCCAATATGGTGGCCGTGGCATTGGCGCAGGTGTTGGATCGGGATACGGTGACG
CCAACCCTTAATTTCCTTCGTAAAGGAAATTCTAGAAATGAGCCCAACACACCTTTGTTTGTTGTCATGTCTACGATGTA
CAATTTGTTCTCATTTATTTGTACCTGTTCAATGTATTATGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis