Browse Element(s) Details


Os.11337.1.S1_at

Description gb:AU164553
DB_XREF= gi:11172980
DB_XREF=AU164553
CLONE=R0486
TID=Os.11337.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=4
UG=Os.11337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0039C14.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3166011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31620OsAffx.30628.1.S1_at11/1110+16237809..16238372expressed protein
LOC_Os10g31630Os.47370.1.S1_at11/1110+16245957..16248353expressed protein
LOC_Os10g31630Os.47370.1.S1_s_at7/1110+16245957..16248353expressed protein
LOC_Os10g31640Os.10013.1.S1_at10/1110+16252113..16252959expressed protein
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein
LOC_Os10g31680Os.9180.1.S1_at11/1110+16278418..16279130expressed protein
LOC_Os10g31690Os.46829.1.S1_at11/1110+16284309..16285065hypothetical protein
LOC_Os10g31700OsAffx.20289.1.S1_at11/1110+16287233..16288940hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11337.1.S1_at--155--9171Chr10:16263131..16263155 (25 bp)
TGCCCATGCAACTGCTGGAGGGAGC
LOC_Os10g31660
Os.11337.1.S1_at--882--7511Chr10:16263184..16263208 (25 bp)
GTGGATCGGCATATGGTTCTGGAAA
LOC_Os10g31660
Os.11337.1.S1_at--1158--851Chr10:16263208..16263232 (25 bp)
ATGGCTCAGGCTCAAGCTCTAGTCA
LOC_Os10g31660
Os.11337.1.S1_at--881--7511Chr10:16263346..16263370 (25 bp)
GTGGATCTGGCTCTGGTTATAGCAA
LOC_Os10g31660
Os.11337.1.S1_at--1154--3011Chr10:16263492..16263516 (25 bp)
AATGCCTCTCCATAATTACCTTTAT
LOC_Os10g31660
Os.11337.1.S1_at--432--3071Chr10:16263519..16263543 (25 bp)
AATCAGTTCAAAGTTGGAGCCCAAC
LOC_Os10g31660
Os.11337.1.S1_at--373--6651Chr10:16263551..16263575 (25 bp)
GTTGAATCCGTGTATTTTTATCGTA
LOC_Os10g31660
Os.11337.1.S1_at--662--511Chr10:16263570..16263594 (25 bp)
ATCGTACTTGTTATGTCTACTTGGT
LOC_Os10g31660
Os.11337.1.S1_at--806--10711Chr10:16263616..16263640 (25 bp)
TTGCTTTCGAAGATGTACCCCTGTA
LOC_Os10g31660
Os.11337.1.S1_at--1056--6251Chr10:16263627..16263651 (25 bp)
GATGTACCCCTGTACTTGGTAGATT
LOC_Os10g31660
Os.11337.1.S1_at--711--7831Chr10:16263644..16263668 (25 bp)
GGTAGATTGTGTCACTTTACTCGGT
LOC_Os10g31660
Target Sequence 
TGCCCATGCAACTGCTGGAGGGAGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATG
GCTCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTGAGTCCGATGCCGGTGGTGGTGGCGGT
GGAGGAGGACAAGGACAGGCTGGAGGATATGGTTCAACTGGTAGTGGATCTGGTAGTGGATCTGGCTCTGGTTATAGCAA
TGCTAATAATAATTGGTATGGGTCAAGTGCGGGAGCGGGTGCTAGTGGTAATGGTGGAGGCAATGGCAATGGTGAAAATG
GCGGGAATGGTAGTGGTGCAGGAGGTGGGTCTGGGTATGGTAATGCCTCTCCATAATTACCTTTATTCAATCAGTTCAAA
GTTGGAGCCCAACTAATAGTGTTGAATCCGTGTATTTTTATCGTACTTGTTATGTCTACTTGGTAGCTACAAATAAAGGG
CTCTGTTGCTTTCGAAGATGTACCCCTGTACTTGGTAGATTGTGTCACTTTACTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis