Browse Element(s) Details


OsAffx.30628.1.S1_at

Description tigr:9638.m02735
TID=OsAffx.30628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3162011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31580NANA10+16215141..16216544retrotransposon protein, putative, unclassified
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31600OsAffx.21897.5.S1_x_at4/1110+16228502..16231423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31610OsAffx.26607.1.S1_at9/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.31510.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.24206.1.S1_at1/1110+16233306..16237009hypothetical protein
LOC_Os10g31620OsAffx.30628.1.S1_at11/1110+16237809..16238372expressed protein
LOC_Os10g31630Os.47370.1.S1_at11/1110+16245957..16248353expressed protein
LOC_Os10g31630Os.47370.1.S1_s_at7/1110+16245957..16248353expressed protein
LOC_Os10g31640Os.10013.1.S1_at10/1110+16252113..16252959expressed protein
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30628.1.S1_at--251--10851Chr10:16238299..16238323 (25 bp)
TTGGGTTAGCCAACGCTGCAAGAGT
LOC_Os10g31620
OsAffx.30628.1.S1_at--86--2611Chr10:16238288..16238312 (25 bp)
AACGCTGCAAGAGTGGCTAGATTCT
LOC_Os10g31620
OsAffx.30628.1.S1_at--332--6131Chr10:16238278..16238302 (25 bp)
GAGTGGCTAGATTCTCTATCTCGAG
LOC_Os10g31620
OsAffx.30628.1.S1_at--714--6571Chr10:16238269..16238293 (25 bp)
GATTCTCTATCTCGAGCGCAACGGG
LOC_Os10g31620
OsAffx.30628.1.S1_at--515--7691Chr10:16238229..16238253 (25 bp)
GGGTGCCGGCTATGTAAACGGTCAT
LOC_Os10g31620
OsAffx.30628.1.S1_at--1075--2571Chr10:16238213..16238237 (25 bp)
AACGGTCATGGCTTAGGGTCTGGAA
LOC_Os10g31620
OsAffx.30628.1.S1_at--549--5491Chr10:16238169..16238193 (25 bp)
GAACAGCGTGGTTGAAGGATCTCAT
LOC_Os10g31620
OsAffx.30628.1.S1_at--20--9011Chr10:16238157..16238181 (25 bp)
TGAAGGATCTCATGCGGTTGCCCAA
LOC_Os10g31620
OsAffx.30628.1.S1_at--942--6411Chr10:16238152..16238176 (25 bp)
GATCTCATGCGGTTGCCCAAGGGAA
LOC_Os10g31620
OsAffx.30628.1.S1_at--648--10051Chr10:16238055..16238079 (25 bp)
TAGTAGCCTCGATTCTGCAGGATCC
LOC_Os10g31620
OsAffx.30628.1.S1_at--318--5831Chr10:16238035..16238059 (25 bp)
GATCCTCTAAAGCTGGTGGTACCGG
LOC_Os10g31620
Target Sequence 
TTGGGTTAGCCAACGCTGCAAGAGTGGCTAGATTCTCTATCTCGAGCGCAACGGGCACCGGAGGAGGTGAGGGTGCCGGC
TATGTAAACGGTCATGGCTTAGGGTCTGGAAGCGGGGCCAGCTCGGGCGAGAACAGCGTGGTTGAAGGATCTCATGCGGT
TGCCCAAGGGAAAGGTGGAGGCGGTGGAGGTGCACCATATGGCGGAGCTGGATTTGGCGGTGGGTCTGGGTCAGGCTCAG
TGTTTAGTAGCCTCGATTCTGCAGGATCCTCTAAAGCTGGTGGTACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis