Browse Element(s) Details


Os.10013.1.S1_at

Description gb:CA757411
DB_XREF= gi:25801450
DB_XREF=OD105C05_T3.CRO
CLONE=OD105C05_T3.CRO
TID=Os.10013.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0039C14.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3164010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31600OsAffx.21897.5.S1_x_at4/1110+16228502..16231423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31610OsAffx.26607.1.S1_at9/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.31510.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.24206.1.S1_at1/1110+16233306..16237009hypothetical protein
LOC_Os10g31620OsAffx.30628.1.S1_at11/1110+16237809..16238372expressed protein
LOC_Os10g31630Os.47370.1.S1_at11/1110+16245957..16248353expressed protein
LOC_Os10g31630Os.47370.1.S1_s_at7/1110+16245957..16248353expressed protein
LOC_Os10g31640Os.10013.1.S1_at10/1110+16252113..16252959expressed protein
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10013.1.S1_at--378--6371Chr10:16252640..16252664 (25 bp)
GATCCGGCGTTGGTTCAAGCTCTAG
LOC_Os10g31640
Os.10013.1.S1_at--985--1571Chr10:16252623..16252647 (25 bp)
AGCTCTAGTCAGTATGCTACCGGGT
LOC_Os10g31640
Os.10013.1.S1_at--660--611Chr10:16252610..16252634 (25 bp)
ATGCTACCGGGTATTATTCTGGTTA
LOC_Os10g31640
Os.10013.1.S1_at--956--10431Chr10:16252588..16252612 (25 bp)
TTATGGTGGTTACTCTAGCGCTGGA
LOC_Os10g31640
Os.10013.1.S1_at--463--10031Chr10:16252474..16252498 (25 bp)
TAGTTCGGCCAACACATACTATGGT
LOC_Os10g31640
Os.10013.1.S1_at--1026--3691Chr10:16252456..16252480 (25 bp)
CTATGGTGGACCGAGTTACGCGAAT
LOC_Os10g31640
Os.10013.1.S1_at--710--6071Chr10:16252444..16252468 (25 bp)
GAGTTACGCGAATGCTGATGCTAAT
LOC_Os10g31640
Os.10013.1.S1_at--1123--9711Chr10:16252411..16252435 (25 bp)
TAATGGTAAAGGCACCGGTACATAT
LOC_Os10g31640
Os.10013.1.S1_at--419--811Chr10:16252349..16252373 (25 bp)
ATGGTGATGCCAGCCCATAATTCTC
LOC_Os10g31640
Os.10013.1.S1_at--74--10211Chr10:16252246..16252270 (25 bp)
TATTTGTACTCTTTTATGTCTAGCA
LOC_Os10g31640
Os.10013.1.S1_at--1043--8271NONE
GGCTCTATTATTTTGGTAAACGTGC
NONE
Target Sequence 
GATCCGGCGTTGGTTCAAGCTCTAGTCAGTATGCTACCGGGTATTATTCTGGTTATGGTGGTTACTCTAGCGCTGGAGGT
AACGGTGGAGGTGGTGGTGGAGGACAAGCTGGGGGTAACTGGGGATCTAGTGGTTCTGGTGATGGCAGTGGTGCTGGCTC
TGGCTCTAGTTCGGCCAACACATACTATGGTGGACCGAGTTACGCGAATGCTGATGCTAATGGTAATGGTAATGGTAAAG
GCACCGGTACATATGGTGGGAGCGGTGGTGGCCAAGGTACNGGTTCTGGATATGGTGATGCCAGCCCATAATTCTCCTCA
CCATCCAACCAAAATACACTTGAATAGAGCCTAATGTGTAATATTGTATTTTGAAGTTATAGTATTTTTTTCTTTATTTG
TACTCTTTTATGTCTAGCAAGAAATAAAGGGCTCTATTATTTTGGTAAACGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis