Browse Element(s) Details


Os.47370.1.S1_at

Description gb:BX900653
DB_XREF= gi:40493212
DB_XREF=BX900653
CLONE=y736b03p5
TID=Os.47370.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0039C14.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3163011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31600OsAffx.21897.5.S1_x_at4/1110+16228502..16231423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31610OsAffx.26607.1.S1_at9/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.31510.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.24206.1.S1_at1/1110+16233306..16237009hypothetical protein
LOC_Os10g31620OsAffx.30628.1.S1_at11/1110+16237809..16238372expressed protein
LOC_Os10g31630Os.47370.1.S1_at11/1110+16245957..16248353expressed protein
LOC_Os10g31630Os.47370.1.S1_s_at7/1110+16245957..16248353expressed protein
LOC_Os10g31640Os.10013.1.S1_at10/1110+16252113..16252959expressed protein
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47370.1.S1_at--421--7711Chr10:16246397..16246421 (25 bp)
GGTGGTGGCTATCTAAACGGTGGAG
LOC_Os10g31630
Os.47370.1.S1_at--450--3051Chr10:16246389..16246413 (25 bp)
CTATCTAAACGGTGGAGGGTCTGGG
LOC_Os10g31630
Os.47370.1.S1_at--584--1051Chr10:16246374..16246398 (25 bp)
AGGGTCTGGGTTTGGTAGTGGTGCT
LOC_Os10g31630
Os.47370.1.S1_at--536--10831Chr10:16246363..16246387 (25 bp)
TTGGTAGTGGTGCTGGGTCTGCTCA
LOC_Os10g31630
Os.47370.1.S1_at--1117--7691Chr10:16246349..16246373 (25 bp)
GGGTCTGCTCAGAGTGGGAATCCTT
LOC_Os10g31630
Os.47370.1.S1_at--164--7171Chr10:16246347..16246371 (25 bp)
GTCTGCTCAGAGTGGGAATCCTTTT
LOC_Os10g31630
Os.47370.1.S1_at--192--3751Chr10:16246342..16246366 (25 bp)
CTCAGAGTGGGAATCCTTTTGGTTC
LOC_Os10g31630
Os.47370.1.S1_at--1129--6111Chr10:16246338..16246362 (25 bp)
GAGTGGGAATCCTTTTGGTTCCTAT
LOC_Os10g31630
Os.47370.1.S1_at--38--7491Chr10:16246336..16246360 (25 bp)
GTGGGAATCCTTTTGGTTCCTATGC
LOC_Os10g31630
Os.47370.1.S1_at--399--7611Chr10:16246334..16246358 (25 bp)
GGGAATCCTTTTGGTTCCTATGCAA
LOC_Os10g31630
Os.47370.1.S1_at--933--5251Chr10:16246332..16246356 (25 bp)
GAATCCTTTTGGTTCCTATGCAACT
LOC_Os10g31630
Target Sequence 
GGTGGTGGCTATCTAAACGGTGGAGGGTCTGGGTTTGGTAGTGGTGCTGGGTCTGCTCAGAGTGGGAATCCTTTTGGTTC
CTATGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis