Browse Element(s) Details


OsAffx.26607.1.S1_at

Description tigr:9638.m02734
TID=OsAffx.26607.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g316109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31570OsAffx.30627.1.S1_at11/1110+16208344..16208952expressed protein
LOC_Os10g31580NANA10+16215141..16216544retrotransposon protein, putative, unclassified
LOC_Os10g31590NANA10+16222075..16228185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31600OsAffx.21897.5.S1_x_at4/1110+16228502..16231423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31610OsAffx.26607.1.S1_at9/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.31510.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_at3/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.27681.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_x_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.1755.1.S1_at2/1110+16233306..16237009hypothetical protein
LOC_Os10g31610OsAffx.24206.1.S1_at1/1110+16233306..16237009hypothetical protein
LOC_Os10g31620OsAffx.30628.1.S1_at11/1110+16237809..16238372expressed protein
LOC_Os10g31630Os.47370.1.S1_at11/1110+16245957..16248353expressed protein
LOC_Os10g31630Os.47370.1.S1_s_at7/1110+16245957..16248353expressed protein
LOC_Os10g31640Os.10013.1.S1_at10/1110+16252113..16252959expressed protein
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26607.1.S1_at--610--8791NONE
TGTTCATTAAGTGCGGAATCATCAA
NONE
OsAffx.26607.1.S1_at--1117--2111NONE
ACATGGCAGGAGCTGCCTTGTTGCT
NONE
OsAffx.26607.1.S1_at--501--5151Chr10:16236617..16236641 (25 bp)
GCAACATCCGCAGGGATGCTTTCTT
LOC_Os10g31610
OsAffx.26607.1.S1_at--764--8871Chr10:16236633..16236657 (25 bp)
TGCTTTCTTCCCTGCACTATTTTTC
LOC_Os10g31610
OsAffx.26607.1.S1_at--264--10351Chr10:16236652..16236676 (25 bp)
TTTTTCCTCGGTGACATCATCCCAG
LOC_Os10g31610
OsAffx.26607.1.S1_at--89--1611Chr10:16236675..16236699 (25 bp)
AGCTGCTGCCTACCAATATAACTGC
LOC_Os10g31610
OsAffx.26607.1.S1_at--287--251Chr10:16236690..16236714 (25 bp)
ATATAACTGCTCCATCACCCAACGT
LOC_Os10g31610
OsAffx.26607.1.S1_at--159--7211Chr10:16236719..16236743 (25 bp)
GTCGTCGTTGATGCTTCCAGCGCTG
LOC_Os10g31610
OsAffx.26607.1.S1_at--1062--7171Chr10:16236871..16236895 (25 bp)
GTCTGGTTCGACTCCAATCACAGGG
LOC_Os10g31610
OsAffx.26607.1.S1_at--368--5531Chr10:16236912..16236936 (25 bp)
GAAAAAACTCTCACCTCTCGAAGCT
LOC_Os10g31610
OsAffx.26607.1.S1_at--784--10511Chr10:16236953..16236977 (25 bp)
TTCACTCTAGTGTCCTACAGCCAAT
LOC_Os10g31610
Target Sequence 
TGTTCATTAAGTGCGGAATCATCAACCGCGCGTCACGGTTGGTACGACATCGTTTGTGGTGTAGCGATTGCACGGCGTCC
TGGACTTGTTCTGGTTGGTAGCCACGTCGCAAACGTCGCACTCGATAAAAGCGAGAGTTATCCCCTCACCAGAAGATCGG
GCCACATGGCAGGAGCTGCCTTGTTGCTTGGAGCAGCAACATCCGCAGGGATGCTTTCTTCCCTGCACTATTTTTCCTCG
GTGACATCATCCCAGCTGCTGCCTACCAATATAACTGCTCCATCACCCAACGTCGCCGTCGTCGTTGATGCTTCCAGCGC
TGCCGTCCTCGCCGCCGCTGTCGCCGCCGCCGATTGGGGAAGATTGGGGAATGGAACTCGGGATTGGGGAAGATTGGGGA
ATGGAACTCGGGTGGGGGAGATGGGGATGACTGGGTCTGGTTCGACCCAGTCTGGTTCGACTCCAATCACAGGGGCAATC
CGGGTATTACGAAAAAACTCTCACCTCTCGAAGCTCGAAAATTATAAAATATTCACTCTAGTGTCCTACAGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis