Browse Element(s) Details


Os.46669.1.A1_at

Description gb:BE039930
DB_XREF= gi:8334946
DB_XREF=OC101E09
TID=Os.46669.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycine-rich protein (OSJNBb0039P10.07G10.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g317307/11expressed protein
LOC_Os10g317101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31690Os.46829.1.S1_at11/1110+16284309..16285065hypothetical protein
LOC_Os10g31700OsAffx.20289.1.S1_at11/1110+16287233..16288940hypothetical protein
LOC_Os10g31710Os.46829.1.S1_at2/1110+16291738..16292313hypothetical protein
LOC_Os10g31710Os.46669.1.A1_at1/1110+16291738..16292313hypothetical protein
LOC_Os10g31720Os.21894.1.S1_at9/1110+16296433..16297165expressed protein
LOC_Os10g31720Os.46829.1.S1_at1/1110+16296433..16297165expressed protein
LOC_Os10g31730Os.46669.1.A1_at7/1110+16305109..16305924expressed protein
LOC_Os10g31740NANA10+16309565..16311322hypothetical protein
LOC_Os10g31750OsAffx.20288.1.S1_at11/1110+16314140..16315824hypothetical protein
LOC_Os10g31760OsAffx.18479.1.S1_at11/1110+16319426..16320593hypothetical protein
LOC_Os10g31760OsAffx.29576.3.S1_x_at1/1110+16319426..16320593hypothetical protein
LOC_Os10g31770Os.18181.1.S1_x_at11/1110+16322527..16330943pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46669.1.A1_at--458--3371Chr10:16305644..16305668 (25 bp)
CAGCCAATATGGTGGGTCAGGGTCT
LOC_Os10g31730
Os.46669.1.A1_at--508--8571Chr10:16305554..16305578 (25 bp)
TGGATCATCCAGTGCTGGCGGTAGC
LOC_Os10g31730
Os.46669.1.A1_at--658--4711Chr10:16291918..16291938 (21 bp)
GCTGGTGGTTACTGGCCATCCTACG
LOC_Os10g31710
Os.46669.1.A1_at--1124--9911NONE
TACTGGCCATCCTACGGTCATGGGT
NONE
Os.46669.1.A1_at--646--3751Chr10:16305455..16305479 (25 bp)
CTCAGGCTCTAGTGAGGCTACTAAT
LOC_Os10g31730
Os.46669.1.A1_at--126--8891Chr10:16305443..16305467 (25 bp)
TGAGGCTACTAATACCTGGTATGGA
LOC_Os10g31730
Os.46669.1.A1_at--755--10611NONE
TTCGGTGATGCGAACCCTTAATTTC
NONE
Os.46669.1.A1_at--1027--2291Chr10:16305282..16305305 (24 bp)
AAATGGAGCCCAACTAGTAGTCATG
LOC_Os10g31730
Os.46669.1.A1_at--1069--6931NONE
GTAGTCATGTTTGATTGTCTGTGAA
NONE
Os.46669.1.A1_at--53--10071Chr10:16305219..16305243 (25 bp)
TAGTACTTGTTTATGCATTATGCAG
LOC_Os10g31730
Os.46669.1.A1_at--1029--9771Chr10:16305187..16305211 (25 bp)
TAAAGGGCTCCATTGTTTTAGTAAT
LOC_Os10g31730
Target Sequence 
CAGCCAATATGGTGGGTCAGGGTCTGGTAGTGGATCTGGTTCGGGCTCAGGCTCTAGCCAGACCAATCAAAATGGGTATT
ATGGTTATGGTGGATCATCCAGTGCTGGCGGTAGCGGTGCTGGTGCTGGAGCTGGACAAGCTGGTGGTTACTGGCCATCC
TACGGTCATGGGTCTGGTAGTGGTACCGGCTCAGGCTCTAGTGAGGCTACTAATACCTGGTATGGACAGTATGCAAATGC
AAATGCTGGTGGCAATGGTGGTGGTAACGGTCAGGGTCAATATGGTGGCAGCGGTGCTGGTGTAGGTTCCGGATCTGGGT
TCGGTGATGCGAACCCTTAATTTCCTTCACAAAGGAAATTGGAAAATGGAGCCCAACTAGTAGTCATGTTTGATTGTCTG
TGAAGTAGAATTTCTTTTAATTTATTAGTACTTGTTTATGCATTATGCAGAATGAAATAAAGGGCTCCATTGTTTTAGTA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46669.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis