Browse Element(s) Details


Os.18181.1.S1_x_at

Description gb:AK072120.1
DB_XREF= gi:32982143
TID=Os.18181.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127E14, full insert sequence.
FL= gb:AK072120.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3177011/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31730Os.46669.1.A1_at7/1110+16305109..16305924expressed protein
LOC_Os10g31740NANA10+16309565..16311322hypothetical protein
LOC_Os10g31750OsAffx.20288.1.S1_at11/1110+16314140..16315824hypothetical protein
LOC_Os10g31760OsAffx.18479.1.S1_at11/1110+16319426..16320593hypothetical protein
LOC_Os10g31760OsAffx.29576.3.S1_x_at1/1110+16319426..16320593hypothetical protein
LOC_Os10g31770Os.18181.1.S1_x_at11/1110+16322527..16330943pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g31780NANA10+16334542..16335327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g31790Os.15802.2.S1_x_at11/1110+16336424..16344008ubiquitin family protein, putative, expressed
LOC_Os10g31800NANA10+16344657..16345385hypothetical protein
LOC_Os10g31810Os.17674.1.S1_at11/1110+16346191..16348479expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18181.1.S1_x_at--639--5671Chr10:16330007..16330031 (25 bp)
GACATTACCTATATCCGTGGTCCAA
LOC_Os10g31770
Os.18181.1.S1_x_at--60--5671Chr10:16330199..16330223 (25 bp)
GACATCGGTTCATCTACGGTTGCAA
LOC_Os10g31770
Os.18181.1.S1_x_at--1120--5651Chr10:16330271..16330292 (22 bp)
GACATGGCTTTTCTTGTCCAGGGAA
LOC_Os10g31770
Os.18181.1.S1_x_at--535--8071Chr10:16330400..16330424 (25 bp)
GGAGCTCCCAGAACGACTGATCGGT
LOC_Os10g31770
Os.18181.1.S1_x_at--263--9051Chr10:16330424..16330448 (25 bp)
TGCAGTTCGTGTTTCGCACATTGAA
LOC_Os10g31770
Os.18181.1.S1_x_at--260--8871Chr10:16330512..16330536 (25 bp)
TGATGATCGCAACGTTGGGCACCAT
LOC_Os10g31770
Os.18181.1.S1_x_at--533--451Chr10:16330535..16330559 (25 bp)
ATCTACTTGACTCCTGACAGCATAC
LOC_Os10g31770
Os.18181.1.S1_x_at--1035--6431Chr10:16330584..16330608 (25 bp)
GATAGAGGAACCAACTACCGGCGCT
LOC_Os10g31770
Os.18181.1.S1_x_at--597--2231Chr10:16330622..16330646 (25 bp)
ACAATGTGGCCTATTCTGACTTGAA
LOC_Os10g31770
Os.18181.1.S1_x_at--1062--9071Chr10:16330684..16330708 (25 bp)
TGCTTTGTGCTCAATCATTCTGGTA
LOC_Os10g31770
Os.18181.1.S1_x_at--914--4331Chr10:16330785..16330809 (25 bp)
CCAGGTTAGGGTCAGCTCAGCTTGA
LOC_Os10g31770
Target Sequence 
GACATTACCTATATCCGTGGTCCAAATTATTTAGAAATAGATGTGGACATCGGTTCATCTACGGTTGCAAATGGAGTCTT
GGGGCTAGTGTGTGGTGTGATCACGACACTAGTTGTTGACATGGCTTTTCTTGTCCAGGGAAATACATATGAGGAGCTCC
CAGAACGACTGATCGGTGCAGTTCGTGTTTCGCACATTGAACTGAAATCCGCAATAGTTCCTGTCCTTGGGGATTAACAA
ACTTACTACTGCTGCCTACTGCACTGATGATCGCAACGTTGGGCACCATCTACTTGACTCCTGACAGCATACAACAATAC
AACACATGTGTACAGAGATAGAGGAACCAACTACCGGCGCTCATGTCATGTCAAACAATGTGGCCTATTCTGACTTGAAG
TGAACAAAATGATGAATGTTTCAATGTATGTAATTATGCTTTGTGCTCAATCATTCTGGTAGGTATTAGTACAATTGCGT
GGCAAAAAGAAAGAAAGGAGATTAAAAACTAGAAATTAGGAGACTGGAGAGTGAGGCCCAGGTTAGGGTCAGCTCAGCTT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18181.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis