Browse Element(s) Details


OsAffx.18479.1.S1_at

Description tigr:9638.m02749
TID=OsAffx.18479.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3176011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31720Os.21894.1.S1_at9/1110+16296433..16297165expressed protein
LOC_Os10g31720Os.46829.1.S1_at1/1110+16296433..16297165expressed protein
LOC_Os10g31730Os.46669.1.A1_at7/1110+16305109..16305924expressed protein
LOC_Os10g31740NANA10+16309565..16311322hypothetical protein
LOC_Os10g31750OsAffx.20288.1.S1_at11/1110+16314140..16315824hypothetical protein
LOC_Os10g31760OsAffx.18479.1.S1_at11/1110+16319426..16320593hypothetical protein
LOC_Os10g31760OsAffx.29576.3.S1_x_at1/1110+16319426..16320593hypothetical protein
LOC_Os10g31770Os.18181.1.S1_x_at11/1110+16322527..16330943pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g31780NANA10+16334542..16335327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g31790Os.15802.2.S1_x_at11/1110+16336424..16344008ubiquitin family protein, putative, expressed
LOC_Os10g31800NANA10+16344657..16345385hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18479.1.S1_at--98--111Chr10:16319899..16319923 (25 bp)
ATTCAAGGTGGCAGGCGCCGGTTCA
LOC_Os10g31760
OsAffx.18479.1.S1_at--924--8491Chr10:16319891..16319915 (25 bp)
TGGCAGGCGCCGGTTCAGTAATGAA
LOC_Os10g31760
OsAffx.18479.1.S1_at--566--10031Chr10:16319864..16319888 (25 bp)
TAGTAAACACCGAGTGAAACTGCTC
LOC_Os10g31760
OsAffx.18479.1.S1_at--825--6111Chr10:16319853..16319877 (25 bp)
GAGTGAAACTGCTCGGGCCACGTAG
LOC_Os10g31760
OsAffx.18479.1.S1_at--1115--3331Chr10:16319835..16319859 (25 bp)
CACGTAGTCGGCACCTGACGAGGGC
LOC_Os10g31760
OsAffx.18479.1.S1_at--1092--8271Chr10:16319739..16319763 (25 bp)
GGCATCAGCGATTCCTCCGGCTTAG
LOC_Os10g31760
OsAffx.18479.1.S1_at--653--91Chr10:16319729..16319753 (25 bp)
ATTCCTCCGGCTTAGGCTGATTTTA
LOC_Os10g31760
OsAffx.18479.1.S1_at--1097--3851Chr10:16319713..16319737 (25 bp)
CTGATTTTATTGGAGTGGGCCGCAA
LOC_Os10g31760
OsAffx.18479.1.S1_at--959--4111Chr10:16319693..16319717 (25 bp)
CGCAAGAGGCTGTCCCGGGTTCATG
LOC_Os10g31760
OsAffx.18479.1.S1_at--110--9731Chr10:16319634..16319658 (25 bp)
TCAAGGGATTCCTCGGCAGGACGTA
LOC_Os10g31760
OsAffx.18479.1.S1_at--1120--6571Chr10:16319628..16319652 (25 bp)
GATTCCTCGGCAGGACGTACTTCAC
LOC_Os10g31760
Target Sequence 
ATTCAAGGTGGCAGGCGCCGGTTCAGTAATGAAGATAGTAAACACCGAGTGAAACTGCTCGGGCCACGTAGTCGGCACCT
GACGAGGGCCGCTGCCGCCGACGAATGCCACCGCCGCGGCCTCGGATTCGTCAGCGGGCGGCGGCGGCGGCGGCGGCAGC
GGCATCAGCGATTCCTCCGGCTTAGGCTGATTTTATTGGAGTGGGCCGCAAGAGGCTGTCCCGGGTTCATGGGCGGCACG
GCGGTCGTGATCATGCTGCAGCAGCTCAAGGGATTCCTCGGCAGGACGTACTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis