Browse Element(s) Details


Os.15802.2.S1_x_at

Description gb:AU033191
DB_XREF= gi:3769164
DB_XREF=AU033191
CLONE=S4833_2Z
TID=Os.15802.2
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.15802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine-rich repeat protein (OSJNBa0018F16.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3179011/11ubiquitin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31750OsAffx.20288.1.S1_at11/1110+16314140..16315824hypothetical protein
LOC_Os10g31760OsAffx.18479.1.S1_at11/1110+16319426..16320593hypothetical protein
LOC_Os10g31760OsAffx.29576.3.S1_x_at1/1110+16319426..16320593hypothetical protein
LOC_Os10g31770Os.18181.1.S1_x_at11/1110+16322527..16330943pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g31780NANA10+16334542..16335327NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os10g31790Os.15802.2.S1_x_at11/1110+16336424..16344008ubiquitin family protein, putative, expressed
LOC_Os10g31800NANA10+16344657..16345385hypothetical protein
LOC_Os10g31810Os.17674.1.S1_at11/1110+16346191..16348479expressed protein
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0007165biological_processsignal transduction
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15802.2.S1_x_at--649--6131Chr10:16338260..16338284 (25 bp)
GAGGCTTTTGGAAACCTTCAACATC
LOC_Os10g31790
Os.15802.2.S1_x_at--327--8171Chr10:16337456..16337480 (25 bp)
GGAACAATGGTCTTACATCCCTACC
LOC_Os10g31790
Os.15802.2.S1_x_at--322--631Chr10:16337413..16337437 (25 bp)
ATGCTCGCAGCTCATTACACTTGAT
LOC_Os10g31790
Os.15802.2.S1_x_at--955--9851Chr10:16337398..16337422 (25 bp)
TACACTTGATCTCCATGGCACTGAA
LOC_Os10g31790
Os.15802.2.S1_x_at--62--2191Chr10:16337372..16337394 (23 bp)
ACAAACGACGTTCTTCGGCAGGTGG
LOC_Os10g31790
Os.15802.2.S1_x_at--111--2351Chr10:16336795..16336819 (25 bp)
AAAGCAGCTCGATTTCCGGGTGGGA
LOC_Os10g31790
Os.15802.2.S1_x_at--741--10431Chr10:16336687..16336711 (25 bp)
TTATGTCTCCAGCTTAATCCGTTGT
LOC_Os10g31790
Os.15802.2.S1_x_at--738--6671Chr10:16336619..16336643 (25 bp)
GTTGCTACTCACATCAATCCTAGAT
LOC_Os10g31790
Os.15802.2.S1_x_at--33--7031Chr10:16336592..16336616 (25 bp)
GTACTTGTACTTCATCCTTTTTCAA
LOC_Os10g31790
Os.15802.2.S1_x_at--419--9291Chr10:16336506..16336530 (25 bp)
TCCGTCCATTTCTATTTACTCGTGA
LOC_Os10g31790
Os.15802.2.S1_x_at--864--10471Chr10:16336491..16336515 (25 bp)
TTACTCGTGACTGTTGACCAATCCT
LOC_Os10g31790
Target Sequence 
GAGGCTTTTGGAAACCTTCAACATCTCAAGGCTTTGAGTGTACGGAACAATGGTCTTACATCCCTACCTTCAGCTTTCTT
CATAAAATGCTCGCAGCTCATTACACTTGATCTCCATGGCACTGAAATCACAAACGACGTTCTTCGGCAGGTGGACGGTT
GGGAGGAGTTTGACGAACGTCGAAGGAAGAAGCATCAAAAGCAGCTCGATTTCCGGGTGGGATCATCAGTTGTGTTCGAT
GAAGGTGCGGATGACGATTACAGGCGTTTATAAATAAAATCTCTCTTTGGATAAGATTGTGTATTTTATGTCTCCAGCTT
AATCCGTTGTCGCAAGAATAACTTGTATACTTAAGAACAAATTAGGAGCTGATGTTGCTACTCACATCAATCCTAGATAT
GTACTTGTACTTCATCCTTTTTCAAAATCCCTTCTTTTTAGGGATTCTTTAAACTGTTTAGGGCATCAAGAGNGGAAAAA
CATTACTCCGTCCATTTCTATTTACTCGTGACTGTTGACCAATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15802.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis