Browse Element(s) Details


Os.46865.1.S1_at

Description gb:AK106877.1
DB_XREF= gi:32992086
TID=Os.46865.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBa0034E15.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E04, full insert sequence.
FL= gb:AK106877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1186010/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11820OsAffx.30394.1.S1_at11/1110+6317266..6320164expressed protein
LOC_Os10g11830NANA10+6322727..6323140expressed protein
LOC_Os10g11844NANA10+6330568..6332687hypothetical protein
LOC_Os10g11860Os.46865.1.S1_at10/1110+6342762..6347125MATE efflux family protein, expressed
LOC_Os10g11870Os.7279.3.S1_at8/1110+6348066..6355083transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g11870Os.7279.1.S1_at5/1110+6348066..6355083transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g11870Os.7279.2.S1_x_at4/1110+6348066..6355083transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g11870Os.54857.1.S1_at1/1110+6348066..6355083transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009835biological_processripening
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46865.1.S1_at--355--4731Chr10:6346252..6346276 (25 bp)
GCTGTCACCGTCTTTTTTGGCAATA
LOC_Os10g11860
Os.46865.1.S1_at--937--10351Chr10:6346265..6346289 (25 bp)
TTTTTGGCAATATCGGGCCTGTGCT
LOC_Os10g11860
Os.46865.1.S1_at--1--4491Chr10:6346281..6346423 (25 bp)
GCCTGTGCTTTCAGGTGTGGCAGTA
LOC_Os10g11860
Os.46865.1.S1_at--737--991Chr10:6346429..6346453 (25 bp)
AGGTTGGCAAATTCTGGTGGCATTT
LOC_Os10g11860
Os.46865.1.S1_at--21--5491Chr10:6346456..6346480 (25 bp)
GAACATCGGTTGCTACTACTTGGTA
LOC_Os10g11860
Os.46865.1.S1_at--602--5651Chr10:6346639..6346663 (25 bp)
GACAGGAACATTACTCCAGATGGCC
LOC_Os10g11860
Os.46865.1.S1_at--620--9211Chr10:6346653..6346677 (25 bp)
TCCAGATGGCCATACTATTTTTCAT
LOC_Os10g11860
Os.46865.1.S1_at--258--1311Chr10:6346860..6346884 (25 bp)
AGATGACCACTGAACTCCCAAATAT
LOC_Os10g11860
Os.46865.1.S1_at--1052--4071NONE
CGAGCCCATGACTTTATATATTTTA
NONE
Os.46865.1.S1_at--215--3611Chr10:6346984..6347008 (25 bp)
CATTGTATTTCCTATTTGTTTGCAT
LOC_Os10g11860
Os.46865.1.S1_at--1133--6791Chr10:6347071..6347095 (25 bp)
GTTTTAAACCCACAATCTCACAATT
LOC_Os10g11860
Target Sequence 
GCTGTCACCGTCTTTTTTGGCAATATCGGGCCTGTGCTTTCAGGTGTGGCAGTAGGAGCAGGTTGGCAAATTCTGGTGGC
ATTTGTGAACATCGGTTGCTACTACTTGGTAGGGATCCCATTTGGGGTTCTCTTTGGCTTCAAGCTAAAGCTTGGTGCAT
TGGGGATATGGATGGGCATGTTGACAGGAACATTACTCCAGATGGCCATACTATTTTTCATTATCATGAGAACAAAGTGG
GAGGCACAGGCAATATTGGCGGAAAAAAGGATCAGTGAGTTAGGAGAAACAACGGCCAATGATTGAGAACACATAATTGT
ACAGATGACCACTGAACTCCCAAATATATGGAAATTGGCAAACAGACGAGCTGGAAAAAAATATATAGAATTTACATGTC
TCAAGATCGAGCCCATGACTTTATATATTTTATAAAGGTTTTAGGACATTGTATTTCCTATTTGTTTGCATGGATCGATA
ATCAGCATAGCATAGAATTGACTTTTGTTCATGTTTAATTTTTAAAGGAACTAGTTTTAAACCCACAATCTCACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis