Browse Element(s) Details


Os.46866.1.S1_at

Description gb:AK074016.1
DB_XREF= gi:32984039
TID=Os.46866.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0064P21.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073G21, full insert sequence.
FL= gb:AK074016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3946011/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39430Os.26552.1.S1_at11/1110+20706557..20709446expressed protein
LOC_Os10g39434NANA10+20709917..20711620hypothetical protein
LOC_Os10g39440Os.28087.1.S1_s_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.49153.1.A1_x_at11/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39440Os.28087.1.S1_at9/1110+20718616..20722967hexose transporter, putative, expressed
LOC_Os10g39450Os.51573.1.S1_x_at2/1110+20725755..20726522Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39460Os.46866.1.S1_at11/1110+20728433..20731616PPR986-12, putative, expressed
LOC_Os10g39470OsAffx.1887.1.S1_x_at11/1110+20736620..20745261expressed protein
LOC_Os10g39470Os.7121.1.S1_at11/1110+20736620..20745261expressed protein
LOC_Os10g39480OsAffx.828.1.S1_x_at2/1110+20752790..20753419retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46866.1.S1_at--681--7491Chr10:20729096..20729120 (25 bp)
GTGGTGGCCCAGACAGATCGTGATA
LOC_Os10g39460
Os.46866.1.S1_at--400--351Chr10:20729074..20729098 (25 bp)
ATAACGTTGGACTTTGCGCGCAGGT
LOC_Os10g39460
Os.46866.1.S1_at--37--2071Chr10:20729017..20729041 (25 bp)
ACTTGCTTTTTTCCCCAGTAGGATG
LOC_Os10g39460
Os.46866.1.S1_at--896--1171Chr10:20729001..20729025 (25 bp)
AGTAGGATGATCACCCAAGACCGCT
LOC_Os10g39460
Os.46866.1.S1_at--724--8071Chr10:20728955..20728979 (25 bp)
GGAGCAGCATCCAGCATGGCCAGTT
LOC_Os10g39460
Os.46866.1.S1_at--548--6711Chr10:20728820..20728957 (25 bp)
GTTCGCAACGCTACACCGGGAGGAA
LOC_Os10g39460
Os.46866.1.S1_at--101--2251Chr10:20728748..20728772 (25 bp)
AAATTCGGCGTTTGGTTTGCTGTGC
LOC_Os10g39460
Os.46866.1.S1_at--75--631Chr10:20728699..20728723 (25 bp)
ATGCTGTTTCTGTTTCCACTGGTAT
LOC_Os10g39460
Os.46866.1.S1_at--816--9791Chr10:20728677..20728701 (25 bp)
TATAGTGGTATTGCCCGTTTCGGTC
LOC_Os10g39460
Os.46866.1.S1_at--914--331Chr10:20728518..20728542 (25 bp)
ATACAGGGTTCATCTCACTGTCTGC
LOC_Os10g39460
Os.46866.1.S1_at--579--7171Chr10:20728499..20728523 (25 bp)
GTCTGCCAACCTTTGTGTTCTAATT
LOC_Os10g39460
Target Sequence 
GTGGTGGCCCAGACAGATCGTGATAACGTTGGACTTTGCGCGCAGGTCGCGTTGGTTGGAGTGGTTTGCGGTCTAGGACA
CTTGCTTTTTTCCCCAGTAGGATGATCACCCAAGACCGCTGCACTGCACCTGCCCCATGTGGGAGCAGCATCCAGCATGG
CCAGTTCGCAACGCTACACCGGGAGGAAGCAAAAAGGTTTCTTCGCCGTTGACTTATTACGGGTGTGGCCAGAAGAAATT
CGGCGTTTGGTTTGCTGTGCATATGTGTGAGCCATGGTAGTTACATGCTGTTTCTGTTTCCACTGGTATAGTGGTATTGC
CCGTTTCGGTCCCAGGTGAGTCTGAACTCTGAAGACCATTTTATCTTTCACAAGATTCTGTAATAATCTGGTTGGTGGAT
GAAGGCAGTGTTTTCATAAAAGATTCATTAATTTCGTGGTGGGATTTAGTGTGTCCAGTGTAATCATACAGGGTTCATCT
CACTGTCTGCCAACCTTTGTGTTCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis