Browse Element(s) Details


Os.46902.1.S1_x_at

Description gb:AJ302060.1
DB_XREF= gi:18103930
GEN=grp5
TID=Os.46902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46902 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for glycine rich RNA binding protein (grp5 gene).
PROD=glycine rich RNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g436006/11Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os03g467701/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46902.1.S1_x_at--35--5172Chr12:27027063..27027087 (25 bp)
GCAAGGAGCTCGACGGCCGCAACAT
LOC_Os12g43600
Os.46902.1.S1_x_at--273--3491NONE
CATCACCGTTAACGAGGCCCAGTCG
NONE
Os.46902.1.S1_x_at--257--9611Chr12:27027411..27027435 (25 bp)
TCATCGTTAGTTTTGTGTGGAACTA
LOC_Os12g43600
Os.46902.1.S1_x_at--152--1211NONE
AGTTTGTGTTAACTGTGTGGTTGCC
NONE
Os.46902.1.S1_x_at--58--2571Chr12:27027452..27027475 (24 bp)
AACTGTGTGGTTGCCCATCTGTGTT
LOC_Os12g43600
Os.46902.1.S1_x_at--543--3791Chr12:27027505..27027524 (20 bp)
CTCGTTTGCTTTGATCAAATGAATG
LOC_Os12g43600
Os.46902.1.S1_x_at--830--4131Chr12:27027551..27027575 (25 bp)
CGCTCTCGTCAAATCCATCGAATTA
LOC_Os12g43600
Os.46902.1.S1_x_at--1085--5211Chr12:27027570..27027594 (25 bp)
GAATTATTTAATTTGTCATGGTTGT
LOC_Os12g43600
Os.46902.1.S1_x_at--495--9631NONE
TCATGGTTGTGAATCTTGGTTGCCC
NONE
Os.46902.1.S1_x_at--893--8571NONE
TGGTTGTGAATCTTGGTTGCCCTGG
NONE
Os.46902.1.S1_x_at--630--7351NONE
GTGAATCTTGGTTGCCCTGGAATGA
NONE
Target Sequence 
GCAAGGAGCTCGACGGCCGCAACATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTAC
GGCCAGCGCGGCGGAGGCGGAGGCTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCG
TGAAGCGGCTACGGCGGTGGCGGTGGCTACGGTGGCGGCCGTGGTGGCGGCAGCTACGGTGGTGGCTACGGCAGCCGCGG
CGGCGGCAACTCCGACGGGAACTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCT
ACCATCATCATCATCCGATCGTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTGGTTGCCCAT
CTGTGTTTTTGATCGCAAGAAGAAAGCTCGTCTCGTTTGCTTTGATCAAATGAATGAATGAATGAATCTTAGTGTGCTCC
GCTCTCGTCAAATCCATCGAATTATTTAATTTGTCATGGTTGTGAATCTTGGTTGCCCTGGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46902.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis