Browse Element(s) Details


Os.47039.1.S1_x_at

Description gb:AF011331.1
DB_XREF= gi:2293479
TID=Os.47039.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47039 (NCBI UniGene Cluster)
DEF=Oryza sativa glycine-rich protein mRNA, complete cds.
PROD=glycine-rich protein
FL= gb:AF011331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g436003/11Glycine-rich RNA-binding protein GRP1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47039.1.S1_x_at--153--7911Chr12:27027006..27027030 (25 bp)
GGTTCGTGACGTTCTCGAGCGAGCA
LOC_Os12g43600
Os.47039.1.S1_x_at--576--1891Chr12:27027014..27027038 (25 bp)
ACGTTCTCGAGCGAGCAGGCCATGC
LOC_Os12g43600
Os.47039.1.S1_x_at--272--3491NONE
CATCACCGTTAACGAGGCCCAGTCG
NONE
Os.47039.1.S1_x_at--912--6731NONE
GTTAACGAGGCCCAGTCGCGCCGCT
NONE
Os.47039.1.S1_x_at--734--8431Chr12:27027212..27027236 (25 bp)
GGCCAGCGCCGTGAAGGCGGCTACG
LOC_Os12g43600
Os.47039.1.S1_x_at--238--451NONE
ATCTAGTTTGTGTTAACTGTGTTGG
NONE
Os.47039.1.S1_x_at--892--1951NONE
ACTGTGTTGGTTGCCCATCTTGTGT
NONE
Os.47039.1.S1_x_at--589--3891NONE
CTGTGTTGGTTGCCCATCTTGTGTT
NONE
Os.47039.1.S1_x_at--1130--8671NONE
TGTGTTGGTTGCCCATCTTGTGTTT
NONE
Os.47039.1.S1_x_at--265--10871NONE
TTGGTTGCCCATCTTGTGTTTTTGA
NONE
Os.47039.1.S1_x_at--953--8571NONE
TGGTTGCCCATCTTGTGTTTTTGAT
NONE
Target Sequence 
GGTTCGTGACGTTCTCGAGCGAGCAGGCCATGCGCGACGCCATCGAGGGGATGAACGGCAAGGAGCTCGACGGCCGCAAC
ATCACCGTTAACGAGGCCCAGTCGCGCCGCTCCGGAGGCGGAGGCGGCGGTGGCTACGGCCAGCGCGGCGGAGGCGGAGG
CTACGGTGGCGGCGGCTACGGTGGTGGTGGCGGCGGCGGTGGCTACGGCCAGCGCCGTGAAGGCGGCTACGGCGGTGGCG
GTGGCTACGGTGGCGGCCGTGGTGGCGGCAGCTANCGGTGGTGGCTACGGCAGCCGCGGCGGCGGCAACTCCGACGGGAA
CTGGAGGAACTGAGCGGTGGGGCCCTCATGGCCAAGTTATCTATCTATCTAATCGAGCTACCATCCATCATCATCCGATC
GTTATCATCGTTAGTTTTGTGTGGAACTATCTAGTTTGTGTTAACTGTGTTGGTTGCCCATCTTGTGTTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47039.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis