Browse Element(s) Details


Os.4717.1.S1_at

Description gb:AK101662.1
DB_XREF= gi:32986871
TID=Os.4717.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057L03, full insert sequence.
FL= gb:AK121810.1 gb:AK101662.1 gb:AK102363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3648011/11Nitrate reductase 1, putative, expressed
LOC_Os08g365009/11Nitrate reductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36470NANA8+22890353..22890631transposon protein, putative, unclassified
LOC_Os08g36480Os.4717.1.S1_at11/118+22900388..22905751Nitrate reductase 1, putative, expressed
LOC_Os08g36490OsAffx.29558.1.S1_x_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490Os.7353.1.S1_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490OsAffx.14369.1.A1_at1/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006790biological_processsulfur metabolism
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004128molecular_functioncytochrome-b5 reductase activity
GO:0008134molecular_functiontranscription factor binding
GO:0008482molecular_functionsulfite oxidase activity
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4717.1.S1_at--951--3212Chr08:22905169..22905193 (25 bp)
CAAGGTGTGGTACGTCATCGACCAG
LOC_Os08g36480
Os.4717.1.S1_at--10--9612Chr08:22905183..22905207 (25 bp)
TCATCGACCAGGTGAAGCGGCCGGA
LOC_Os08g36480
Os.4717.1.S1_at--732--6992Chr08:22905355..22905379 (25 bp)
GTACGACATGGCCAATTCTTTCATC
LOC_Os08g36480
Os.4717.1.S1_at--794--3672Chr08:22905372..22905396 (25 bp)
CTTTCATCGTGTTCTAAACTCCTAC
LOC_Os08g36480
Os.4717.1.S1_at--514--312Chr08:22905406..22905430 (25 bp)
ATACGCACCGCATTAATTATTTTGG
LOC_Os08g36480
Os.4717.1.S1_at--984--10152Chr08:22905449..22905473 (25 bp)
TATACGTGTCGTGCCAATTAGAAAC
LOC_Os08g36480
Os.4717.1.S1_at--247--7032Chr08:22905560..22905584 (25 bp)
GTACATACTGCATACATAGGCCATG
LOC_Os08g36480
Os.4717.1.S1_at--883--6512Chr08:22905584..22905608 (25 bp)
GATTTCCCTTTCTAAGAGGCTAGCG
LOC_Os08g36480
Os.4717.1.S1_at--395--2792Chr08:22905597..22905621 (25 bp)
AAGAGGCTAGCGGTTGATTCCTTCC
LOC_Os08g36480
Os.4717.1.S1_at--72--6591Chr08:22905612..22905636 (25 bp)
GATTCCTTCCTGTATACTAGTAGCT
LOC_Os08g36480
Os.4717.1.S1_at--238--2571Chr08:22905650..22905674 (25 bp)
AACTGTATTGTTGTTAGCCATGGGA
LOC_Os08g36480
Target Sequence 
CAAGGTGTGGTACGTCATCGACCAGGTGAAGCGGCCGGAGGAAGGGTGGAAGTACGGCGTCGGGTTCGTCACGGAGGAGG
TGCTGCGGGAGCACGTGCCGGAGGGCGGCGACGACACGCTCGCGCTCGCCTGCGGGCCGCCGCCGATGATCAAGTTCGCC
GTCTCGCCGAACCTGGAGAAGATGAAGTACGACATGGCCAATTCTTTCATCGTGTTCTAAACTCCTACTACTAAATTATA
CGCACCGCATTAATTATTTTGGTATACGTACGACGATGTATATACGTGTCGTGCCAATTAGAAACGAAATGCTGCATGCA
TGCGTATGCAAGATGAGAGAAAAAAAAACAATATCTAAGTTGTAGTAGTGTACTCTTGATAATATCCTAGAGTACATACT
GCATACATAGGCCATGATTTCCCTTTCTAAGAGGCTAGCGGTTGATTCCTTCCTGTATACTAGTAGCTTGTAATTACCAA
TAACTGTATTGTTGTTAGCCATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis