Browse Element(s) Details


OsAffx.29561.2.S1_at

Description tigr:9636.m03669
TID=OsAffx.29561.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=chloroplast nucleoid DNA binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3652011/11Aspartic proteinase nepenthesin-1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36480Os.4717.1.S1_at11/118+22900388..22905751Nitrate reductase 1, putative, expressed
LOC_Os08g36490OsAffx.29558.1.S1_x_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490Os.7353.1.S1_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490OsAffx.14369.1.A1_at1/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29561.2.S1_at--931--1771Chr08:22929907..22929931 (25 bp)
ACCGTGACCATGACGGTCCCGGACA
LOC_Os08g36520
OsAffx.29561.2.S1_at--491--8351Chr08:22929865..22929889 (25 bp)
GGCGGCGCCAACATGTTACATCCAA
LOC_Os08g36520
OsAffx.29561.2.S1_at--238--8411Chr08:22929862..22929886 (25 bp)
GGCGCCAACATGTTACATCCAATTC
LOC_Os08g36520
OsAffx.29561.2.S1_at--259--4391Chr08:22929859..22929883 (25 bp)
GCCAACATGTTACATCCAATTCTAA
LOC_Os08g36520
OsAffx.29561.2.S1_at--476--2112Chr11:7413950..7414078 (24 bp)
ACATGTTACATCCAATTCTAAGTTT
NONE
OsAffx.29561.2.S1_at--706--6771Chr08:22929851..22929875 (25 bp)
GTTACATCCAATTCTAAGTTTATTA
LOC_Os08g36520
OsAffx.29561.2.S1_at--261--6191Chr08:22929819..22929843 (25 bp)
GAGGAAGTACTACAGTATCGCAGTA
LOC_Os08g36520
OsAffx.29561.2.S1_at--652--2011Chr08:22929811..22929835 (25 bp)
ACTACAGTATCGCAGTACCATGTCT
LOC_Os08g36520
OsAffx.29561.2.S1_at--558--9872Chr08:22934253..22934272 (20 bp)
TACAGTATCGCAGTACCATGTCTCC
NONE
OsAffx.29561.2.S1_at--219--1191Chr08:22929798..22929822 (25 bp)
AGTACCATGTCTCCACGTATGATTT
LOC_Os08g36520
OsAffx.29561.2.S1_at--1036--6971Chr08:22929797..22929821 (25 bp)
GTACCATGTCTCCACGTATGATTTG
LOC_Os08g36520
Target Sequence 
ACCGTGACCATGACGGTCCCGGACATGGAGCTCCACTTCGACGGCGGCGCCAACATGTTACATCCAATTCTAAGTTTATT
ATTTTGTAGAGGAAGTACTACAGTATCGCAGTACCATGTCTCCACGTATGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29561.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis