Browse Element(s) Details


OsAffx.29558.1.S1_x_at

Description tigr:9636.m03666
TID=OsAffx.29558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3649011/11HEC/Ndc80p family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36470NANA8+22890353..22890631transposon protein, putative, unclassified
LOC_Os08g36480Os.4717.1.S1_at11/118+22900388..22905751Nitrate reductase 1, putative, expressed
LOC_Os08g36490OsAffx.29558.1.S1_x_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490Os.7353.1.S1_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490OsAffx.14369.1.A1_at1/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29558.1.S1_x_at--8--9271Chr08:22909964..22909988 (25 bp)
TCCTCCCCGGTTGAACTGCTAGGAA
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--871--671Chr08:22910006..22910030 (25 bp)
ATGAAACCTGCACTCAATTCTCTTG
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--160--3191Chr08:22910020..22910044 (25 bp)
CAATTCTCTTGCTGACGAGGCTAGA
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--844--1731Chr08:22910130..22910154 (25 bp)
ACCATATTTCAGTTTGTCAGACCAA
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--248--7911Chr08:22910999..22911023 (25 bp)
GGTTGCTCGATTGGATTCACTGGAT
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--1073--991Chr08:22911094..22911118 (25 bp)
AGGATCACCACCTGAGTACTGTTGA
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--773--2751Chr08:22911291..22911315 (25 bp)
AAGAAATTCAGATGTGCGCCAGAGA
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--730--7291Chr08:22911304..22911328 (25 bp)
GTGCGCCAGAGAACTGCTGAAACTT
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--291--5831Chr08:22911389..22911413 (25 bp)
GACCTTTATGAAACCGTCGACGACA
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--108--7231Chr08:22911404..22911428 (25 bp)
GTCGACGACATCTCTTCTTTGGCAT
LOC_Os08g36490
OsAffx.29558.1.S1_x_at--97--10251Chr08:22911421..22911445 (25 bp)
TTTGGCATCCAAGGCAGCATCTACC
LOC_Os08g36490
Target Sequence 
TCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCACTCAATTCTCTTGCTGACGAGGCTAG
AAGGATATCCATCTTAAAGCATGATGAGTCAGTTGAGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGA
AAAAGAACCATATTTCAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAATTGGG
AATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGAAAAAGGATCACCACCTGAGTACTGT
TGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCGAAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTC
AGATGTGCGCCAGAGAACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATATCTGGG
ATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29558.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis