Browse Element(s) Details


Os.55778.1.S1_at

Description gb:AK108789.1
DB_XREF= gi:32993998
TID=Os.55778.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B04, full insert sequence.
FL= gb:AK108789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3654011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36490OsAffx.29558.1.S1_x_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490Os.7353.1.S1_at11/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36490OsAffx.14369.1.A1_at1/118+22906774..22911694HEC/Ndc80p family protein, expressed
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55778.1.S1_at--777--4531Chr08:22937276..22937300 (25 bp)
GCGAACCGGACCGTCGAGGACTACG
LOC_Os08g36540
Os.55778.1.S1_at--420--6191Chr08:22937291..22937315 (25 bp)
GAGGACTACGAGCTCTGCTTCGTGC
LOC_Os08g36540
Os.55778.1.S1_at--93--7631Chr08:22937409..22937433 (25 bp)
GGGACAACTACTTCCAGGAGCCGAG
LOC_Os08g36540
Os.55778.1.S1_at--396--1891Chr08:22937520..22937544 (25 bp)
ACGTACTCTTCGATGTGCAACACCA
LOC_Os08g36540
Os.55778.1.S1_at--1026--4051Chr08:22937530..22937554 (25 bp)
CGATGTGCAACACCACAAGTTCTCC
LOC_Os08g36540
Os.55778.1.S1_at--1156--10691Chr08:22937556..22937580 (25 bp)
TTGCGCCCACGCAGTGTGATCAAAT
LOC_Os08g36540
Os.55778.1.S1_at--426--8971Chr08:22937582..22937606 (25 bp)
TGAAACACTCTTACTACTAACACAG
LOC_Os08g36540
Os.55778.1.S1_at--725--3311Chr08:22937602..22937626 (25 bp)
CACAGTTGTTCTTACAATTTTCCCT
LOC_Os08g36540
Os.55778.1.S1_at--986--5511Chr08:22937640..22937664 (25 bp)
GAAAATGTTATTAGCCTTCCGGATT
LOC_Os08g36540
Os.55778.1.S1_at--142--6451Chr08:22937694..22937718 (25 bp)
GATCAAGTATTGACGTTTCGAAACG
LOC_Os08g36540
Os.55778.1.S1_at--352--2791Chr08:22937731..22937755 (25 bp)
AAGAGGAAATGCACCACAGATGTAT
LOC_Os08g36540
Target Sequence 
GCGAACCGGACCGTCGAGGACTACGAGCTCTGCTTCGTGCTGCCGCGCCGCACGGCTGCGGCGGCGATGGAGGCGGTGCA
GGTTCCGCCGCTGGTGCTGCACTTCGACGGCGGCGCGGCGATGGTGCTGCCGCGGGACAACTACTTCCAGGAGCCGAGAG
CCGGGCTGATGTGCCTGGCCGTGGGCAAGACGACGGACGGCTCCGGCGTGTCCATCATCGGCAACGTCCAGCAGCAGAAC
ATGCACGTACTCTTCGATGTGCAACACCACAAGTTCTCCTTTGCGCCCACGCAGTGTGATCAAATCTGAAACACTCTTAC
TACTAACACAGTTGTTCTTACAATTTTCCCTTTTATTTTTCCCTGAAAATGTTATTAGCCTTCCGGATTAANATATCCAA
TAANAAAAAGGATTCATCGATCAAGTATTGACGTTTCGAAACGACAAAAGAGAATAAGAGGAAATGCACCACAGATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis