Browse Element(s) Details


OsAffx.6044.1.S1_at

Description tigr:9636.m03673
TID=OsAffx.6044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T26F17.12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3656011/11emp24/gp25L/p24 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36500Os.4717.1.S1_at9/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36500Os.46481.2.S1_x_at1/118+22918579..22922733Nitrate reductase 1, putative, expressed
LOC_Os08g36510OsAffx.29559.1.S1_at11/118+22926023..22927234hypothetical protein
LOC_Os08g36520OsAffx.29561.2.S1_at11/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36520OsAffx.29561.1.S1_x_at1/118+22929767..22930384Aspartic proteinase nepenthesin-1 precursor, putative
LOC_Os08g36530OsAffx.29561.1.S1_x_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36530OsAffx.29561.1.S1_at11/118+22932792..22934138Eukaryotic aspartyl protease family protein
LOC_Os08g36540Os.55778.1.S1_at11/118+22936461..22937758Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g36550OsAffx.6043.1.S1_at9/118+22939321..22941710hypothetical protein
LOC_Os08g36560OsAffx.6044.1.S1_at11/118+22943250..22944601emp24/gp25L/p24 family protein
LOC_Os08g36570Os.56199.1.S1_at9/118+22945023..22946523expressed protein
LOC_Os08g36580Os.51364.1.A1_at11/118+22947474..22948192expressed protein
LOC_Os08g36580OsAffx.24604.1.S1_at1/118+22947474..22948192expressed protein
LOC_Os08g36590Os.54549.1.S1_at11/118+22952678..22954761expressed protein
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein
LOC_Os08g36620OsAffx.22848.3.S1_x_at3/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_at2/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_x_at1/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6044.1.S1_at--961--4671Chr08:22943310..22943334 (25 bp)
GCGGTGTGGATGGAGCTATCTACAA
LOC_Os08g36560
OsAffx.6044.1.S1_at--384--5931Chr08:22943357..22943381 (25 bp)
GAGAATCCAATCAAACGTCGTCGTT
LOC_Os08g36560
OsAffx.6044.1.S1_at--1137--1871Chr08:22943371..22943395 (25 bp)
ACGTCGTCGTTATCGGTGACTACGA
LOC_Os08g36560
OsAffx.6044.1.S1_at--19--2031Chr08:22943389..22943413 (25 bp)
ACTACGACATCCTCTTCGATGGGTA
LOC_Os08g36560
OsAffx.6044.1.S1_at--283--331Chr08:22943427..22943633 (25 bp)
ATACTCTCCATCCAGGTTATTCTTG
LOC_Os08g36560
OsAffx.6044.1.S1_at--693--10411Chr08:22943662..22943686 (25 bp)
TTATTCTTGGATTGCTCCTGCAGGT
LOC_Os08g36560
OsAffx.6044.1.S1_at--13--3851Chr08:22943679..22943703 (25 bp)
CTGCAGGTGACATCGCCTTATGGAA
LOC_Os08g36560
OsAffx.6044.1.S1_at--163--8151Chr08:22943700..22943724 (25 bp)
GGAAAAGTCTTACACCACAGGGAGA
LOC_Os08g36560
OsAffx.6044.1.S1_at--889--5011Chr08:22943732..22943756 (25 bp)
GCAGGGCCAGTTTTCATTTAACACA
LOC_Os08g36560
OsAffx.6044.1.S1_at--756--8551Chr08:22943765..22943789 (25 bp)
TGGAGTTTATCTGGCATGCTTCTCG
LOC_Os08g36560
OsAffx.6044.1.S1_at--540--631Chr08:22943780..22943804 (25 bp)
ATGCTTCTCGGTGGATACCTTGGAT
LOC_Os08g36560
Target Sequence 
GCGGTGTGGATGGAGCTATCTACAACAGCGACCAAGTGCTTCTCGGAGAGAATCCAATCAAACGTCGTCGTTATCGGTGA
CTACGACATCCTCTTCGATGGGTACCCAACGCGCCCCATACTCTCCATCCAGGTTATTCTTGGATTGCTCCTGCAGGTGA
CATCGCCTTATGGAAAAGTCTTACACCACAGGGAGAAGGTTATGCAGGGCCAGTTTTCATTTAACACAGCAGAACCTGGA
GTTTATCTGGCATGCTTCTCGGTGGATACCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis