Browse Element(s) Details


Os.4756.1.S1_at

Description gb:AK121892.1
DB_XREF= gi:37991515
TID=Os.4756.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for putative hydrolase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105C15, full insert sequence.
FL= gb:AK121892.1 gb:AK106147.1 gb:AB062681.1 gb:AK061722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3308011/11hydrolase, carbon-nitrogen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein
LOC_Os02g33100OsAffx.12327.1.S1_at11/112+19654414..19654755hypothetical protein
LOC_Os02g33100OsAffx.12327.1.S1_x_at11/112+19654414..19654755hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009446biological_processputrescine biosynthesis
GO:0000257molecular_functionnitrilase activity
GO:0003837molecular_functionbeta-ureidopropionase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4756.1.S1_at--313--5771Chr02:19647021..19647045 (25 bp)
GACGTTCTTGTAGCAGAGTTCGACT
LOC_Os02g33080
Os.4756.1.S1_at--484--5031Chr02:19647033..19647057 (25 bp)
GCAGAGTTCGACTTGGACGAGATCA
LOC_Os02g33080
Os.4756.1.S1_at--152--4051Chr02:19647050..19647074 (25 bp)
CGAGATCAAGTCTACCAGGCATGGT
LOC_Os02g33080
Os.4756.1.S1_at--354--7291Chr02:19647079..19647103 (25 bp)
GGATATTTAGGGACCGGCGTCCTGA
LOC_Os02g33080
Os.4756.1.S1_at--122--5831Chr02:19647090..19647114 (25 bp)
GACCGGCGTCCTGATCTATATAAAG
LOC_Os02g33080
Os.4756.1.S1_at--109--2331Chr02:19647111..19647135 (25 bp)
AAAGTGCTTCTAACATTGGATGGCG
LOC_Os02g33080
Os.4756.1.S1_at--2--5991Chr02:19647135..19647159 (25 bp)
GAGAAATCATGATAAGGTCCACCTT
LOC_Os02g33080
Os.4756.1.S1_at--1034--1732Chr02:19647155..19647179 (25 bp)
ACCTTTGTGGAGTCATCTATCCTTG
LOC_Os02g33080
Os.4756.1.S1_at--539--5511Chr02:19647179..19647203 (25 bp)
GAAAAGGTACATGAGCTCCACAACA
LOC_Os02g33080
Os.4756.1.S1_at--200--10331Chr02:19647323..19647347 (25 bp)
TTTCACCAATTTCCGATTCCACAAT
LOC_Os02g33080
Os.4756.1.S1_at--455--3871Chr02:19647522..19647546 (25 bp)
CTGATAACATTATTGTGCTGCTGCT
LOC_Os02g33080
Target Sequence 
GACGTTCTTGTAGCAGAGTTCGACTTGGACGAGATCAAGTCTACCAGGCATGGTTGGGGGATATTTAGGGACCGGCGTCC
TGATCTATATAAAGTGCTTCTAACATTGGATGGCGAGAAATCATGATAAGGTCCACCTTTGTGGAGTCATCTATCCTTGA
AAAGGTACATGAGCTCCACAACATTGGGAGGACATACACAGGGNCCATAAATGCTGCCACTACAATCATGGTAGATCACC
CCTCTTCCCTTCTCAGGAATCTCTGTTGTACACGGCTTCTCTGTGTTNGCTGCTTAGTGATTTTTCACCAATTTCCGATT
CCACAATAAAATGCTCGTGGTGTGTCGTTCTGGCAGACAATTGAGAATATAACATATTAAAACCTCTATGTTATGCACCA
CAATGTTTCTTTTTTTTTTNNNGAGGGGTACACCACAATGTTTCTCGAATCATTTTGTTTTTGAAANCTGGGTTTCTTGA
AACATTTCGATCTGAAACGGAGTTTCTGATAACATTATTGTGCTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis