Browse Element(s) Details


Os.4765.1.S1_s_at

Description gb:AK104946.1
DB_XREF= gi:32990155
TID=Os.4765.1
CNT=74
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4765 (NCBI UniGene Cluster)
UG_TITLE=MRNA for elongation factor 1B gamma, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F01, full insert sequence.
FL= gb:AK103901.1 gb:AK104946.1 gb:AK061944.1 gb:D89802.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1280011/11Elongation factor 1-gamma, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12790Os.53733.1.S1_at10/112+6705768..6707433GATA zinc finger family protein, expressed
LOC_Os02g12800OsAffx.24215.1.S1_x_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S1_s_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S2_at9/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12810NANA2+6726340..6733254MAP3K delta-1 protein kinase, putative, expressed
LOC_Os02g12820OsAffx.12011.1.S1_at11/112+6747298..6749884Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0003746molecular_functiontranslation elongation factor activity
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4765.1.S1_s_at--854--2732Chr02:6723346..6723370 (25 bp)
AAGAACTTTCAGATGGGTGTCTCCA
LOC_Os02g12800
Os.4765.1.S1_s_at--288--3672Chr02:6723351..6723375 (25 bp)
CTTTCAGATGGGTGTCTCCAACAAG
LOC_Os02g12800
Os.4765.1.S1_s_at--1120--10532Chr02:6723489..6723513 (25 bp)
TTCTAGAGACTCCTGATGGTCCTGT
LOC_Os02g12800
Os.4765.1.S1_s_at--588--1352Chr02:6723493..6723517 (25 bp)
AGAGACTCCTGATGGTCCTGTTTTT
LOC_Os02g12800
Os.4765.1.S1_s_at--384--8912Chr02:6723648..6723672 (25 bp)
TGACAACCCACTCTATGGGTCTTCA
LOC_Os02g12800
Os.4765.1.S1_s_at--1026--3312Chr02:6723656..6723680 (25 bp)
CACTCTATGGGTCTTCACTGATTGA
LOC_Os02g12800
Os.4765.1.S1_s_at--244--7152Chr02:6718607..6718707 (25 bp)
GTCTTCACTGATTGAATATGCCCAC
LOC_Os02g12800
Os.4765.1.S1_s_at--288--1352Chr02:6724039..6724063 (25 bp)
AGAGATCATTGGGTGCCCTCAACAC
LOC_Os02g12800
Os.4765.1.S1_s_at--1116--3732Chr02:6724134..6724158 (25 bp)
CTCTACATGGGCTTTGCTCGGATCA
LOC_Os02g12800
Os.4765.1.S1_s_at--214--8312Chr02:6724143..6724167 (25 bp)
GGCTTTGCTCGGATCATGACCAAGA
LOC_Os02g12800
Os.4765.1.S1_s_at--930--10373Chr04:13799523..13799995 (25 bp)
TTTTACTTCTGAGTTCCCTCATGTT
NONE
Target Sequence 
AAGAACTTTCAGATGGGTGTCTCCAACAAGACNCCTGAGTNTCTCAAGATGAATCCTATTGGGAAGNTNCCTNTTCTAGA
GACTCCTGATGGTCCTGTTTTTGANAGCAATGCGATTGCACGATATGTTACNCGCTCGAAGNCTGACAACCCACTCTATG
GGTCTTCACTGATTGAATATGCCCACATNGAGCAGTGGANTGACTTTTCNGCCACAGAGGTTGATGCTAATANTGGAAAA
TGGCTCTNCCCACGNCTNGGANTTGCTCCNTATGTTGCTGTNAGTGAGGAAGCAGCTATTGCTGCTTTGAAGAGATCATT
GGGTGCCCTCAACACACACCTTGCATCAAACACATACCTTGTTGGCCATTCNGTGACTCTTGCTGATATTGTGATGACNT
GNAACCTCTACATGGGCTTTGCTCGGATCATGACCAAGANTTTTACTTCTGAGTTCCCTCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4765.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis