Browse Element(s) Details


Os.53733.1.S1_at

Description gb:AK099607.1
DB_XREF= gi:32984816
TID=Os.53733.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013048G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048G01, full insert sequence.
FL= gb:AK099607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1279010/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g12770OsAffx.24214.1.S1_at4/112+6687558..6689840Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12790Os.53733.1.S1_at10/112+6705768..6707433GATA zinc finger family protein, expressed
LOC_Os02g12800OsAffx.24215.1.S1_x_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S1_s_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S2_at9/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12810NANA2+6726340..6733254MAP3K delta-1 protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009735biological_processresponse to cytokinin stimulus
GO:0010255biological_processglucose mediated signaling
GO:0051171biological_processregulation of nitrogen metabolism
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53733.1.S1_at--415--2791Chr02:6706251..6706275 (25 bp)
AAGATGGTCGATCACGTTGCTGCTG
LOC_Os02g12790
Os.53733.1.S1_at--689--3231Chr02:6706213..6706237 (25 bp)
CAAGCCCACGGCTGCTGGAGAAGTA
LOC_Os02g12790
Os.53733.1.S1_at--90--5311Chr02:6706174..6706198 (25 bp)
GAAGGACCAAGATCACGTCATCGTC
LOC_Os02g12790
Os.53733.1.S1_at--802--8231Chr02:6706114..6706138 (25 bp)
GGCACAGAACCCGATATCCAAGGCG
LOC_Os02g12790
Os.53733.1.S1_at--67--8671Chr02:6705990..6706014 (25 bp)
TGTGGCCTCGTCCACAGCTAGCTAG
LOC_Os02g12790
Os.53733.1.S1_at--591--4851Chr02:6705948..6705972 (25 bp)
GCTAGCTACTAGTACCGTTAATTTG
LOC_Os02g12790
Os.53733.1.S1_at--298--6091Chr02:6705907..6705931 (25 bp)
GAGTACTATGTACCACTACTAGCAA
LOC_Os02g12790
Os.53733.1.S1_at--769--3111Chr02:6705884..6705908 (25 bp)
AATATTTTGTGTGTGCCTTGTGATC
LOC_Os02g12790
Os.53733.1.S1_at--82--7291Chr02:6705872..6705896 (25 bp)
GTGCCTTGTGATCTTTTGTTGTTTT
LOC_Os02g12790
Os.53733.1.S1_at--685--6491Chr02:6705809..6705833 (25 bp)
GATAGTGATCACATGTCTAAGGACG
LOC_Os02g12790
Os.53733.1.S1_at--78--4851Chr02:6705756..6705780 (25 bp)
GCTACTAGCCGGGATCAGGATTATA
NONE
Target Sequence 
AAGATGGTCGATCACGTTGCTGCTGCCGTCGCTGCCACCAAGCCCACGGCTGCTGGAGAAGTAGTGGCCGCCGCTCCGAA
GGACCAAGATCACGTCATCGTCGTCGGTGGCGAGAACGCCGCCGCCACCTCCATGCCGGCACAGAACCCGATATCCAAGG
CGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCTGCTCATGACCCTATCCTGTGGCCTCGTCCACAGCTAGCTAGCTAGCTGATCAAAACTAGCTAGCTACTAGTACCG
TTAATTTGATGAGGGCAACAACCAGAGTACTATGTACCACTACTAGCAATATTTTGTGTGTGCCTTGTGATCTTTTGTTG
TTTTGTGTTGTTGAGGAGATCACTAGATCAGGATGAAGGAGAGATAGTGATCACATGTCTAAGGACGAAATAAACGAGAA
CAAACTCGCTAGCTAGCTACTAGCCGGGATCAGGATTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis