Browse Element(s) Details


OsAffx.24214.1.S1_at

Description tigr:9630.m01163
TID=OsAffx.24214.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1278011/11Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g127704/11Cytokinin dehydrogenase 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g12770OsAffx.24214.1.S1_at4/112+6687558..6689840Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12790Os.53733.1.S1_at10/112+6705768..6707433GATA zinc finger family protein, expressed
LOC_Os02g12800OsAffx.24215.1.S1_x_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S1_s_at11/112+6716934..6726017Elongation factor 1-gamma, putative, expressed
LOC_Os02g12800Os.4765.1.S2_at9/112+6716934..6726017Elongation factor 1-gamma, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24214.1.S1_at--822--9932Chr02:6695164..6695188 (25 bp)
TACGTGCAATTCCTTGATCGTGTGA
LOC_Os02g12780
OsAffx.24214.1.S1_at--1124--3992Chr02:6695166..6695190 (25 bp)
CGTGCAATTCCTTGATCGTGTGAGG
LOC_Os02g12780
OsAffx.24214.1.S1_at--558--9012Chr02:6695168..6695192 (25 bp)
TGCAATTCCTTGATCGTGTGAGGGA
LOC_Os02g12780
OsAffx.24214.1.S1_at--979--3152Chr02:6695171..6695195 (25 bp)
AATTCCTTGATCGTGTGAGGGAGGA
LOC_Os02g12780
OsAffx.24214.1.S1_at--824--10111Chr02:6695608..6695632 (25 bp)
TATGACCCACACAGGATATTGTCAC
LOC_Os02g12780
OsAffx.24214.1.S1_at--879--5791Chr02:6695611..6695635 (25 bp)
GACCCACACAGGATATTGTCACCAG
LOC_Os02g12780
OsAffx.24214.1.S1_at--481--4151Chr02:6695613..6695637 (25 bp)
CCCACACAGGATATTGTCACCAGGA
LOC_Os02g12780
OsAffx.24214.1.S1_at--293--3311Chr02:6695615..6695639 (25 bp)
CACACAGGATATTGTCACCAGGACA
LOC_Os02g12780
OsAffx.24214.1.S1_at--55--3311Chr02:6695617..6695641 (25 bp)
CACAGGATATTGTCACCAGGACAGA
LOC_Os02g12780
OsAffx.24214.1.S1_at--363--8711Chr02:6695627..6695651 (25 bp)
TGTCACCAGGACAGAGGATTTTCTC
LOC_Os02g12780
OsAffx.24214.1.S1_at--58--1731Chr02:6695631..6695655 (25 bp)
ACCAGGACAGAGGATTTTCTCATCA
LOC_Os02g12780
Target Sequence 
TACGTGCAATTCCTTGATCGTGTGAGGGAGGANGAAAGNNTNCTCNGNTCNATCGGCATGTGGGATGTNCCNCANCCATG
GCTAAACCTCTTCGTNCCNCNNTCNCGCATCCTTGACTTNGANNCNGGTGTGNTNAAGGGTGTNTTNGNTGGTGCCAANC
CTGTNGGNGTCATCCTCATGTANCCCATGAATANGAANATGTGGGATGACNGTATGANNGCNGTGNCNNGNNANGATGAN
NTGTTCTANGNNGTNGGGNTNCTCCGNTCTGCGGNNGTNNNNGGNGATGTGGAACGCCTNGAGANNGAGAANGAGGCNGT
NNTNGCNTTCTGNNATAATGAGGNCATCGGGTGCAAGCANTATCTNCCANANTACNCATCACAAGATGGGTGGCNANGCC
ATTTCGGNGCNAANTGGAGCAGGGTTNCCGANCTAAAGNNNNANTATGACCCACACAGGATATTGTCACCAGGACAGAGG
ATTTTCTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis