Browse Element(s) Details


OsAffx.12010.1.S1_at

Description tigr:9630.m01160
TID=OsAffx.12010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=senescence-associated protein 5, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1275010/11Tetraspanin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g12770OsAffx.24214.1.S1_at4/112+6687558..6689840Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12010.1.S1_at--570--1791Chr02:6677521..6677545 (25 bp)
ACGACGAGTACCACCTCGATGGCTT
LOC_Os02g12750
OsAffx.12010.1.S1_at--249--1191Chr02:6677527..6677551 (25 bp)
AGTACCACCTCGATGGCTTCTCCAT
LOC_Os02g12750
OsAffx.12010.1.S1_at--143--9411Chr02:6677614..6677638 (25 bp)
TCGTCTCCGACACCTGCAAGAAGCT
LOC_Os02g12750
OsAffx.12010.1.S1_at--450--9331NONE
TCGCCACTCCAGTCCGGGTGTTGCA
NONE
OsAffx.12010.1.S1_at--731--1791Chr02:6679447..6679467 (21 bp)
ACTCCAGTCCGGGTGTTGCAAGCCG
LOC_Os02g12750
OsAffx.12010.1.S1_at--1078--4331Chr02:6679447..6679470 (24 bp)
CCAGTCCGGGTGTTGCAAGCCGCCG
LOC_Os02g12750
OsAffx.12010.1.S1_at--321--8691Chr02:6679475..6679499 (25 bp)
TGTGCGGGTACAACTACGTGAGCCC
LOC_Os02g12750
OsAffx.12010.1.S1_at--318--3971Chr02:6679479..6679503 (25 bp)
CGGGTACAACTACGTGAGCCCGACG
LOC_Os02g12750
OsAffx.12010.1.S1_at--332--3391Chr02:6679573..6679597 (25 bp)
CAGCTGTGCTACGAGTGCGAGTCGT
LOC_Os02g12750
OsAffx.12010.1.S1_at--114--9951Chr02:6679582..6679606 (25 bp)
TACGAGTGCGAGTCGTGCCGCGCGG
LOC_Os02g12750
OsAffx.12010.1.S1_at--1080--3771Chr02:6679690..6679714 (25 bp)
CTCGTCGGCTGCAGCGCCTACAAGA
LOC_Os02g12750
Target Sequence 
ACGACGAGTACCACCTCGATGGCTTCTCCATGTGGCTCCGGGGCTACGTCTCCGACGACCCGGCGCGGTGGGAGCGGATC
AAGGCGTGCCTCGTCGTCTCCGACACCTGCAAGAAGCTGGCGCGCCAGGCCGGGTTCCTCACCGCCGACCAGTTCTACCA
GTCGCGCCTCTCGCCACTCCAGTCCGGGTGTTGCAAGCCGCCGGCGGTGTGCGGGTACAACTACGTGAGCCCGACGGTGT
GGGCGGGGCCGGCGGCGCGGCCGGCGGCGGACGCGGACTGCGGGGCGTGGGGGAACGACCCGTCGCAGCTGTGCTACGAG
TGCGAGTCGTGCCGCGCGGGCCTCCTCGCGGCGCTCCGCGCCCAGTGGCACCGCGCCAACGTCGCCCTCGTCGTCGCCAC
CGTCGCCCTCGTCTTCCTCTACCTCGTCGGCTGCAGCGCCTACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis