Browse Element(s) Details


Os.14358.1.S1_at

Description gb:AK059794.1
DB_XREF= gi:32969812
TID=Os.14358.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14358 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to CARSR12 gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E08, full insert sequence.
FL= gb:AK059794.1 gb:AK061043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1273011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein
LOC_Os02g12710NANA2+6648410..6649777hypothetical protein
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14358.1.S1_at--551--9231Chr02:6656000..6656024 (25 bp)
TACTAGTTGTGAGAATTGATTATGC
LOC_Os02g12730
Os.14358.1.S1_at--964--10391Chr02:6655981..6656005 (25 bp)
TTATGCAGGAAATCACAAATAGTTT
LOC_Os02g12730
Os.14358.1.S1_at--722--3291Chr02:6655966..6655990 (25 bp)
CAAATAGTTTTGTCAATCCGTTATT
LOC_Os02g12730
Os.14358.1.S1_at--1--7091Chr02:6655955..6655979 (25 bp)
GTCAATCCGTTATTGTCTGTAGCTA
LOC_Os02g12730
Os.14358.1.S1_at--684--551Chr02:6655951..6655975 (25 bp)
ATCCGTTATTGTCTGTAGCTATCCA
LOC_Os02g12730
Os.14358.1.S1_at--1028--6791Chr02:6655947..6655971 (25 bp)
GTTATTGTCTGTAGCTATCCATTTT
LOC_Os02g12730
Os.14358.1.S1_at--108--7191Chr02:6655941..6655965 (25 bp)
GTCTGTAGCTATCCATTTTTAGGAA
LOC_Os02g12730
Os.14358.1.S1_at--901--4851Chr02:6655934..6655958 (25 bp)
GCTATCCATTTTTAGGAAAACTGTT
LOC_Os02g12730
Os.14358.1.S1_at--1028--6511Chr02:6655897..6655921 (25 bp)
GATTTTACGAGAAGTTGAAGTTGTT
LOC_Os02g12730
Os.14358.1.S1_at--764--6651Chr02:6655884..6655908 (25 bp)
GTTGAAGTTGTTAAAAGCTCTCTAG
LOC_Os02g12730
Os.14358.1.S1_at--540--2691Chr02:6655870..6655894 (25 bp)
AAGCTCTCTAGAGGGCCAATTTAGG
LOC_Os02g12730
Target Sequence 
TACTAGTTGTGAGAATTGATTATGCAGGAAATCACAAATAGTTTTGTCAATCCGTTATTGTCTGTAGCTATCCATTTTTA
GGAAAACTGTTTGATGTGTTGGAGATTTTACGAGAAGTTGAAGTTGTTAAAAGCTCTCTAGAGGGCCAATTTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis