Browse Element(s) Details


Os.24285.1.A1_at

Description gb:AK072526.1
DB_XREF= gi:32982549
TID=Os.24285.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023126A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023126A08, full insert sequence.
FL= gb:AK072526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1274010/11GPI-anchor transamidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein
LOC_Os02g12710NANA2+6648410..6649777hypothetical protein
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g12770OsAffx.24214.1.S1_at4/112+6687558..6689840Cytokinin dehydrogenase 1 precursor, putative
LOC_Os02g12780OsAffx.24214.1.S1_at11/112+6693857..6695685Cytokinin dehydrogenase 1 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006624biological_processvacuolar protein processing or maturation
GO:0010214biological_processseed coat development
GO:0012501biological_processprogrammed cell death
GO:0005615cellular_componentextracellular space
GO:0003923molecular_functionGPI-anchor transamidase activity
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24285.1.A1_at--592--5451Chr02:6669459..6669565 (25 bp)
GAACGGCCATTAAATGAGGTCCCTG
LOC_Os02g12740
Os.24285.1.A1_at--106--6151Chr02:6669444..6669467 (24 bp)
GAGGTCCCTGTGACAAATTTCTTTG
LOC_Os02g12740
Os.24285.1.A1_at--505--8831Chr02:6669361..6669385 (25 bp)
TGATATTGGAACCATCCCATCCACT
LOC_Os02g12740
Os.24285.1.A1_at--1154--6451Chr02:6669333..6669357 (25 bp)
GATAATCTACTGAACCATGCTGTGT
LOC_Os02g12740
Os.24285.1.A1_at--918--9311Chr02:6669177..6669201 (25 bp)
TCCCATGGGTGGACAGATGTTCTGC
LOC_Os02g12740
Os.24285.1.A1_at--1147--6771Chr02:6669085..6669109 (25 bp)
GTTAGCAATTTCAACCTGGTTATCA
LOC_Os02g12740
Os.24285.1.A1_at--973--2991Chr02:6669004..6669028 (25 bp)
AATGAATCATCCTAACCCCTGGATA
LOC_Os02g12740
Os.24285.1.A1_at--308--10231Chr02:6668927..6668951 (25 bp)
TTTGGTAATGTCCATTCAGCTGGGA
LOC_Os02g12740
Os.24285.1.A1_at--125--8771Chr02:6668881..6668905 (25 bp)
TGTATGCCACGTTCAACTTTTTGTC
LOC_Os02g12740
Os.24285.1.A1_at--1142--7111Chr02:6668859..6668883 (25 bp)
GTCAGGATACTCATTATTTGCCATT
LOC_Os02g12740
Os.24285.1.A1_at--1119--151NONE
ATTATTTGCCATTCTTTCCTATTGA
NONE
Target Sequence 
GAACGGCCATTAAATGAGGTCCCTGTGACAAATTTCTTTGGATCANTCATGAATACTATCCNCACAGATTCTGCCTACTC
AGGNTTNTTAGNTGCAGATGATATTGGAACCATCCCATCCACTGGAGATAATCTACTGAACCATGCTGTGTTACAGAATA
AGGCTAGCCAAAGAAGATCAAACATTGAAGAAGTGAAAGAAGCNCAAGTAAGGTCCCATGGGTGGACAGATGTTCTGCTG
GAACAGCTTGATGTCAAGAATGCTGACACTATTGTCATGTATGGTCTGGGAACAATGGGTATACTGTTAGCAATTTCAAC
CTGGTTATCAATGTAGAAACAAAGAAGTATGAAGTGTGCTGTTCACACATCATCCTNTTCTAGATAAATGAATCATCCTA
ACCCCTGGATAGAGATCAAAAAGGAAGAAACTTTGGAGGTTAACTCTTTGTATATTTTTTCTCTTTGGTAATGTCCATTC
AGCTGGGACATAATTTTGTATTTAGTTTTTGTATGCCACGTTCAACTTTTTGTCAGGATACTCATTATTTGCCATTCTTT
CCTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24285.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis