Browse Element(s) Details


Os.14358.4.S1_x_at

Description gb:BI805861
DB_XREF= gi:15853065
DB_XREF=S050C09
CLONE=S050C09
TID=Os.14358.4
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.14358 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to CARSR12 gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1273011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein
LOC_Os02g12710NANA2+6648410..6649777hypothetical protein
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed
LOC_Os02g12750OsAffx.12010.1.S1_at10/112+6677164..6679948Tetraspanin family protein, expressed
LOC_Os02g12760Os.10253.1.S1_at11/112+6680305..6683066plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14358.4.S1_x_at--1012--1871Chr02:6656985..6657009 (25 bp)
ACGTACCACGAGGACAAGTGCCGGT
LOC_Os02g12730
Os.14358.4.S1_x_at--429--6251Chr02:6656481..6656502 (22 bp)
GATGGTACCATGTGCCGAGATCATG
LOC_Os02g12730
Os.14358.4.S1_x_at--141--411Chr02:6656462..6656486 (25 bp)
ATCATGGCTGAAGCCGGGCGGCAAC
LOC_Os02g12730
Os.14358.4.S1_x_at--407--7111Chr02:6656395..6656419 (25 bp)
GTCAGCCTGGCGACGAGAACCACAT
LOC_Os02g12730
Os.14358.4.S1_x_at--418--4611Chr02:6656358..6656382 (25 bp)
GCGAGAGATCATCACCACCATTTGA
LOC_Os02g12730
Os.14358.4.S1_x_at--710--1731Chr02:6656342..6656366 (25 bp)
ACCATTTGATACAGTCGTCGACGGC
LOC_Os02g12730
Os.14358.4.S1_x_at--707--1551Chr02:6656308..6656332 (25 bp)
AGCTTCCTCCTGTAGCACGCAGAAT
LOC_Os02g12730
Os.14358.4.S1_x_at--389--6251Chr02:6656278..6656302 (25 bp)
GATGGTATTTACACACACAGACGAA
LOC_Os02g12730
Os.14358.4.S1_x_at--159--8271Chr02:6656110..6656134 (25 bp)
GGCATGCAGACGCTGTTCAGTTGTT
LOC_Os02g12730
Os.14358.4.S1_x_at--604--9651Chr02:6656094..6656118 (25 bp)
TCAGTTGTTTGCGTTGCTCGGGAAT
LOC_Os02g12730
Os.14358.4.S1_x_at--263--4471Chr02:6656079..6656103 (25 bp)
GCTCGGGAATTTGTTACGGTGCATA
LOC_Os02g12730
Target Sequence 
ACGTACCACGAGGACAAGTGCCGGTCCAACTGCGNCGACCTGTCCCAAANGATGGTACCATGTGCCGAGATCATGGCTGA
AGCCGGGCGGCAACCTGCTGGTGGTGCTGGAGGAGTACGGCGGCGACCTCGCCGGCGTCAGCCTGGCGACGAGAACCACA
TGAACGAATTGCAGCGAGAGATCATCACCACCATTTGATACAGTCGTCGACGGCCGCGTGAACAGCTTCCTCCTGTAGCA
CGCAGAATTCGTCGATGGTATTTACACACACAGACGAACACCTTACAAGNAAAAAAAAAAAAANACAGGAGCAGCAGCAA
CAGGTGTGTATTTATTGGGGAGTCGGAGAGGTGGTTGTCTCGCTCGCCGGTGGCCTTCACTGCGGCTGCAGCGACGGCAG
TGGCATCACCGGCCACCGGCCGGCATGCAGACGCTGTTCAGTTGTTTGCGTTGCTCGGGAATTTGTTACGGTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14358.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis