Browse Element(s) Details


Os.47750.1.A1_at

Description gb:BX928039
DB_XREF= gi:41882676
DB_XREF=BX928039
CLONE=p853b10p3
TID=Os.47750.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.47750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative germin-like protein (P0684B02.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5090011/11Germin-like protein subfamily T member 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein
LOC_Os01g50890NANA1+29557804..29558064hypothetical protein
LOC_Os01g50900Os.47750.1.A1_at11/111+29558747..29559638Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os01g50910Os.10933.1.S1_at11/111+29559895..29561103Late embryogenesis abundant protein, expressed
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47750.1.A1_at--580--2871Chr01:29559384..29559408 (25 bp)
AAGTGGGCGCCATCAAATCTAAGTT
LOC_Os01g50900
Os.47750.1.A1_at--984--2251Chr01:29559398..29559422 (25 bp)
AAATCTAAGTTTGCCGGCTTCTGAC
LOC_Os01g50900
Os.47750.1.A1_at--880--3911Chr01:29559412..29559436 (25 bp)
CGGCTTCTGACCGTGATGGTCATTG
LOC_Os01g50900
Os.47750.1.A1_at--30--831Chr01:29559427..29559451 (25 bp)
ATGGTCATTGGTTTAGCAGCGCAGA
LOC_Os01g50900
Os.47750.1.A1_at--769--4571Chr01:29559445..29559469 (25 bp)
GCGCAGATCGATGGCAGATGCTATA
LOC_Os01g50900
Os.47750.1.A1_at--1074--6331Chr01:29559461..29559485 (25 bp)
GATGCTATATTGCTAATGCTGCCCC
LOC_Os01g50900
Os.47750.1.A1_at--273--4211Chr01:29559484..29559508 (25 bp)
CCCCATTCTTTTGTGTGCGTTCGTG
LOC_Os01g50900
Os.47750.1.A1_at--1064--8691Chr01:29559497..29559521 (25 bp)
TGTGCGTTCGTGTGTGTATTTGTTT
LOC_Os01g50900
Os.47750.1.A1_at--817--2871Chr01:29559542..29559566 (25 bp)
AAGTGGCATTTGTTTGCTACTACAT
LOC_Os01g50900
Os.47750.1.A1_at--807--6851Chr01:29559553..29559577 (25 bp)
GTTTGCTACTACATCGTCTAAATTG
LOC_Os01g50900
Os.47750.1.A1_at--450--3551Chr01:29559564..29559588 (25 bp)
CATCGTCTAAATTGTGTATCTGAAA
LOC_Os01g50900
Target Sequence 
AAGTGGGCGCCATCAAATCTAAGTTTGCCGGCTTCTGACCGTGATGGTCATTGGTTTAGCAGCGCAGATCGATGGCAGAT
GCTATATTGCTAATGCTGCCCCCCATTCTTTTGTGTGCGTTCGTGTGTGTATTTGTTTGTTTTTCATGGGTATATTATAA
GTGGCATTTGTTTGCTACTACATCGTCTAAATTGTGTATCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47750.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis