Browse Element(s) Details


Os.47763.1.A1_s_at

Description gb:BI810333
DB_XREF= gi:15857521
DB_XREF=J004H01
CLONE=J004H01
TID=Os.47763.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47763 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1800011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17950NANA8+11004626..11005114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17960OsAffx.17054.1.S1_at1/118+11009766..11012993hypothetical protein
LOC_Os08g17960OsAffx.30032.3.S1_at1/118+11009766..11012993hypothetical protein
LOC_Os08g17970OsAffx.17057.1.S1_at11/118+11015153..11015431hypothetical protein
LOC_Os08g17980NANA8+11015728..11016339Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os08g17990OsAffx.29260.1.S1_at1/118+11019160..11025246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g18000Os.47763.1.A1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000OsAffx.5863.1.S1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.47763.1.A1_s_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.27037.1.A1_at1/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18030OsAffx.29259.1.S1_at10/118+11045555..11048391hypothetical protein
LOC_Os08g18044Os.13551.1.S1_at11/118+11049105..11056097GMFP4, putative, expressed
LOC_Os08g18060OsAffx.29260.1.S1_at11/118+11058119..11059756expressed protein
LOC_Os08g18070NANA8+11061548..11063635hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47763.1.A1_s_at--1026--6911Chr08:11030004..11030028 (25 bp)
GTATGGCAAATTAACAAGCATCTCT
LOC_Os08g18000
Os.47763.1.A1_s_at--586--9571Chr08:11029980..11030004 (25 bp)
TCTTGGTGAATGGTGTCTTTCTGAC
LOC_Os08g18000
Os.47763.1.A1_s_at--886--2971Chr08:11029972..11029996 (25 bp)
AATGGTGTCTTTCTGACAAGTTCTC
LOC_Os08g18000
Os.47763.1.A1_s_at--262--8731Chr08:11029967..11029991 (25 bp)
TGTCTTTCTGACAAGTTCTCTCGAT
LOC_Os08g18000
Os.47763.1.A1_s_at--1152--3671Chr08:11029964..11029988 (25 bp)
CTTTCTGACAAGTTCTCTCGATTAT
LOC_Os08g18000
Os.47763.1.A1_s_at--941--9471Chr08:11029961..11029985 (25 bp)
TCTGACAAGTTCTCTCGATTATTTT
LOC_Os08g18000
Os.47763.1.A1_s_at--415--3212Chr12:8432394..8432413 (20 bp)
CAAGTTCTCTCGATTATTTTGCCTC
NONE
Os.47763.1.A1_s_at--412--10631Chr08:11029930..11029954 (25 bp)
TTCGACACTCACCTGAACTTAAGGA
LOC_Os08g18000
Os.47763.1.A1_s_at--575--5631Chr08:11029927..11029951 (25 bp)
GACACTCACCTGAACTTAAGGAGCT
LOC_Os08g18000
Os.47763.1.A1_s_at--638--3351Chr08:11029921..11029945 (25 bp)
CACCTGAACTTAAGGAGCTTACTCT
LOC_Os08g18000
Os.47763.1.A1_s_at--302--2691Chr08:11029787..11029919 (25 bp)
AAGCTTGAGGTGGAACGTCAAGACC
LOC_Os08g18000
Target Sequence 
GTATGGCAAATTAACAAGCATCTCTCTTGGTGAATGGTGTCTTTCTGACAAGTTCTCTCGATTATTTTGCCTCTTTCGAC
ACTCACCTGAACTTAAGGAGCTTACTCTGAAGCTTGAGGTGGAACGTCAAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47763.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis