Browse Element(s) Details


OsAffx.29259.1.S1_at

Description tigr:9636.m01816
TID=OsAffx.29259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1803010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17990OsAffx.29260.1.S1_at1/118+11019160..11025246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g18000Os.47763.1.A1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000OsAffx.5863.1.S1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.47763.1.A1_s_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.27037.1.A1_at1/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18030OsAffx.29259.1.S1_at10/118+11045555..11048391hypothetical protein
LOC_Os08g18044Os.13551.1.S1_at11/118+11049105..11056097GMFP4, putative, expressed
LOC_Os08g18060OsAffx.29260.1.S1_at11/118+11058119..11059756expressed protein
LOC_Os08g18070NANA8+11061548..11063635hypothetical protein
LOC_Os08g18080OsAffx.25854.1.S1_at6/118+11071466..11080429hypothetical protein
LOC_Os08g18080OsAffx.27864.4.S1_x_at1/118+11071466..11080429hypothetical protein
LOC_Os08g18080Os.50472.1.S1_at1/118+11071466..11080429hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29259.1.S1_at--415--4091Chr08:11045605..11045629 (25 bp)
CGACGCGGCGTTTGGCAATGGTTTA
LOC_Os08g18030
OsAffx.29259.1.S1_at--197--7591Chr08:11045982..11046244 (25 bp)
GGGCTCCGAGTTTATCAATGCTAGG
LOC_Os08g18030
OsAffx.29259.1.S1_at--449--371Chr08:11046233..11046257 (25 bp)
ATCAATGCTAGGTTTTCACCGGTTT
LOC_Os08g18030
OsAffx.29259.1.S1_at--79--5591NONE
GAAATTAACTGTGCCGTTATCTGCC
NONE
OsAffx.29259.1.S1_at--145--2771Chr08:11047323..11047347 (25 bp)
AAGACCGTAGGAGTGGCCGACACCG
LOC_Os08g18030
OsAffx.29259.1.S1_at--1038--4491Chr08:11047338..11047362 (25 bp)
GCCGACACCGGCAGTAGCGACGAAA
LOC_Os08g18030
OsAffx.29259.1.S1_at--755--671Chr08:11047375..11047399 (25 bp)
ATGACGGGCCGACTATGGCTCTAGT
LOC_Os08g18030
OsAffx.29259.1.S1_at--820--8511Chr08:11047399..11047423 (25 bp)
TGGAAGAGCATCTCGCGGCCATGGC
LOC_Os08g18030
OsAffx.29259.1.S1_at--62--8971Chr08:11048292..11048316 (25 bp)
TGAAATCTCCAACGTCAGACTTTTT
LOC_Os08g18030
OsAffx.29259.1.S1_at--156--2051Chr08:11048310..11048334 (25 bp)
ACTTTTTGCTCTCCACTTATGTGGG
LOC_Os08g18030
OsAffx.29259.1.S1_at--45--8671Chr08:11048329..11048353 (25 bp)
TGTGGGAGTGCGCTTGCTTCCAATC
LOC_Os08g18030
Target Sequence 
CGACGCGGCGTTTGGCAATGGTTTAGGGCGCGCTGCTCCAAGCGGCGGTAGTCGATGGCGGCAGGGAGGGTGGCATTTGG
GAGCTTCCGCTGTGGATGCTTTGGTTGACAGGGGCTCCGAGTTTATCAATGCTAGGTTTTCACCGGTTTTCCTGAAATTA
ACTGTGCCGTTATCTGCCCCGCAAGGACGAGGTCAGCAAGGAAGAGGCAAGACCGTAGGAGTGGCCGACACCGGCAGTAG
CGACGAAAGTGGGGCCCTCAATGACGGGCCGACTATGGCTCTAGTGGAAGAGCATCTCGCGGCCATGGCAATGGACATGG
GGCAGGAGCTTTCTAGAAAAATACCAATAATTGAAATCTCCAACGTCAGACTTTTTGCTCTCCACTTATGTGGGAGTGCG
CTTGCTTCCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis