Browse Element(s) Details


Os.47824.1.S1_at

Description gb:AK073649.1
DB_XREF= gi:32983672
TID=Os.47824.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047A18, full insert sequence.
FL= gb:AK073649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2344011/11anthocyanin-related membrane protein 1, putative, expressed
LOC_Os05g234601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23420Os.27160.1.A1_at11/115+13296340..13305270expressed protein
LOC_Os05g23430NANA5+13307596..13312457expressed protein
LOC_Os05g23440Os.47824.1.S1_at11/115+13327246..13332725anthocyanin-related membrane protein 1, putative, expressed
LOC_Os05g23450Os.53933.1.S1_at11/115+13332955..13335908expressed protein
LOC_Os05g23460Os.50619.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.47824.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.50619.1.S1_x_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23470Os.18025.1.S1_at11/115+13343520..13345932AN1-like Zinc finger family protein, expressed
LOC_Os05g23480OsAffx.26981.1.S1_at11/115+13351667..13352839hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47824.1.S1_at--400--8792Chr05:13338981..13339005 (25 bp)
TGTTCATCCAAAATGCCAGGGTGCA
LOC_Os05g23460
Os.47824.1.S1_at--845--5051Chr05:13332242..13332266 (25 bp)
GCAGCATCATCTGGCATCCGAAAAT
LOC_Os05g23440
Os.47824.1.S1_at--71--6311Chr05:13332269..13332293 (25 bp)
GATGATGGTAAAACTCCTCCCACTA
LOC_Os05g23440
Os.47824.1.S1_at--512--10212Chr05:13342846..13342870 (25 bp)
TATTAGACCTAACGAGCCACATGCT
NONE
Os.47824.1.S1_at--356--951Chr05:13332418..13332442 (25 bp)
AGGAAATGGCCCCTATCATGCCCTC
LOC_Os05g23440
Os.47824.1.S1_at--47--7492Chr05:13343076..13343100 (25 bp)
GTGTGGTAGGTCAGCATATTCATGC
NONE
Os.47824.1.S1_at--452--2991Chr05:13332572..13332596 (25 bp)
AATGTATTCTTGTCTTCTCTTTGGT
LOC_Os05g23440
Os.47824.1.S1_at--1124--10811Chr05:13332581..13332605 (25 bp)
TTGTCTTCTCTTTGGTGCTTCTAAA
LOC_Os05g23440
Os.47824.1.S1_at--330--2891Chr05:13332604..13332628 (25 bp)
AAGGAAGTTCCAGTTAGCCAGAAAG
LOC_Os05g23440
Os.47824.1.S1_at--214--7632Chr05:13343206..13343230 (25 bp)
GGGAAATTCTCTGCCATGTAACTGG
NONE
Os.47824.1.S1_at--598--9192Chr05:13343217..13343241 (25 bp)
TGCCATGTAACTGGGTACCGAAGAT
NONE
Target Sequence 
TGTTCATCCAAAATGCCAGGGTGCAGCATCATCTGGCATCCGAAAATTCGATGATGGTAAAACTCCTCCCACTATTAGAC
CTAACGAGCCACATGCTCAAACATGAAAGTAACTATGGACTACAGAACATAGTGGAAACAAAAAAGAAAATCGAACAAGG
AGAGATTTTGTTAACGCGGATAATTATGTTTGTGTTGAAGGAAATGGCCCCTATCATGCCCTCAGCAACGAGGAGCTGAG
CTGAGAGTTATCTCGGGAATGACTAGAAATTAGGATTATAGAATCATAGTATTGGAATAAACATGTGTGGTAGGTCAGCA
TATTCATGCAATTTGCTGTAATGTAATTTTGCAATGTATTCTTGTCTTCTCTTTGGTGCTTCTAAAGGAAGTTCCAGTTA
GCCAGAAAGTATTTGAGTGCAAAATGTTGTATTGGGGAAATTCTCTGCCATGTAACTGGGTACCGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis