Browse Element(s) Details


Os.18025.1.S1_at

Description gb:AK072411.1
DB_XREF= gi:32982434
TID=Os.18025.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084O03, full insert sequence.
FL= gb:AK072411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2347011/11AN1-like Zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23440Os.47824.1.S1_at11/115+13327246..13332725anthocyanin-related membrane protein 1, putative, expressed
LOC_Os05g23450Os.53933.1.S1_at11/115+13332955..13335908expressed protein
LOC_Os05g23460Os.50619.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.47824.1.S1_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23460Os.50619.1.S1_x_at1/115+13336082..13339026hypothetical protein
LOC_Os05g23470Os.18025.1.S1_at11/115+13343520..13345932AN1-like Zinc finger family protein, expressed
LOC_Os05g23480OsAffx.26981.1.S1_at11/115+13351667..13352839hypothetical protein
LOC_Os05g23490OsAffx.26982.2.S1_at11/115+13363793..13365168hypothetical protein
LOC_Os05g23490OsAffx.26982.1.S1_x_at3/115+13363793..13365168hypothetical protein
LOC_Os05g23500OsAffx.29731.1.S1_at2/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.2.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified
LOC_Os05g23500OsAffx.29731.3.S1_at1/115+13367434..13371473retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18025.1.S1_at--915--4931Chr05:13344137..13344161 (25 bp)
GCATTTCATTTTTCCTAGTTCCTAG
LOC_Os05g23470
Os.18025.1.S1_at--636--3691Chr05:13344123..13344147 (25 bp)
CTAGTTCCTAGGTTGTTCTTGGCAT
LOC_Os05g23470
Os.18025.1.S1_at--320--10851Chr05:13344105..13344129 (25 bp)
TTGGCATTTGCACATCCTTGTTTCA
LOC_Os05g23470
Os.18025.1.S1_at--475--10671Chr05:13344066..13344090 (25 bp)
TTCCATTTCTCCATAGTTTCTGTAG
LOC_Os05g23470
Os.18025.1.S1_at--503--8931Chr05:13344026..13344050 (25 bp)
TGACCTCAACTATTTCCATTCATTG
LOC_Os05g23470
Os.18025.1.S1_at--536--9851Chr05:13343871..13343895 (25 bp)
TACAGCCGAGGCCATAGTAGGATAG
LOC_Os05g23470
Os.18025.1.S1_at--141--1011Chr05:13343853..13343877 (25 bp)
AGGATAGCAGTCTACATCAAGCGAA
LOC_Os05g23470
Os.18025.1.S1_at--222--2451Chr05:13343829..13343853 (25 bp)
AAAATCTATGGGTCGGCTGATGTGG
LOC_Os05g23470
Os.18025.1.S1_at--865--1411Chr05:13343803..13343827 (25 bp)
AGAAAGCTTCACTCTTGTTCATCGT
LOC_Os05g23470
Os.18025.1.S1_at--105--2711Chr05:13343747..13343771 (25 bp)
AAGCTACCACGCACACGGATGATAG
LOC_Os05g23470
Os.18025.1.S1_at--370--6491Chr05:13343727..13343751 (25 bp)
GATAGCAAGTGTACTGTCCAGTCAT
LOC_Os05g23470
Target Sequence 
GCATTTCATTTTTCCTAGTTCCTAGGTTGTTCTTGGCATTTGCACATCCTTGTTTCATGTATATATATTTTTTCCATTTC
TCCATAGTTTCTGTAGATGTTATACATTAATTGACCTCAACTATTTCCATTCATTGAAACCTTGTAGGTTGTATGATCTA
TGAACTATATGGAAGACTNAANCCTGGAGATGCNTGCAAGTGAATCATGCTGTAACTACATGAGCTATTCNAAGAGCATG
ATATCTGCATGTTTGTGAAGTAATTCNCATACAGCCGAGGCCATAGTAGGATAGCAGTCTACATCAAGCGAAAAATCTAT
GGGTCGGCTGATGTGGGAGAAAGCTTCACTCTTGTTCATCGTCCGCCTTCGATGCACACCATAGCTCCTTCTCAAGCTAC
CACGCACACGGATGATAGCAAGTGTACTGTCCAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis